RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA758087", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA758087 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13487034 13487034 PRJNA758087_P_NODE_21231_length_584_cov_7.467710_g19919_i0 PRJNA758087 21231 584 7.46771 43.6114264 Spiroplasma corruscae 216934 Bacteria Bacteria 56.5 0.004   NTclustered gi|1226105578|gb|CP022535.1| 216934 g19919 i0 100 0.0513698630136986 30 0 5 0 539 568 651857 651886 Spiroplasma corruscae strain EC-1 chromosome, complete genome blastn 30 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma corruscae
14762498 14762498 PRJNA758087_P_NODE_32412_length_373_cov_1.853333_g31092_i0 PRJNA758087 32412 373 1.853333 6.91293209 Acholeplasmatales bacterium 2053494 Bacteria Bacteria 107 2.6899999999999994e-24   NR HCS24464.1 2053494 g31092 i0 51.9 3.42627345844504 108 50 86.1 2 17 337 30 136 HCS24464.1 DNA topoisomerase IV subunit A [Acholeplasmatales bacterium] diamond 1278 107 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales     Acholeplasmatales bacterium
22410904 22410904 PRJNA758087_P_NODE_32358_length_374_cov_1.451827_g31038_i0 PRJNA758087 32358 374 1.451827 5.42983298 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 680 0   NTclustered gi|1563796921|emb|LR215008.1| 2107 g31038 i0 99.465 1 374 2 100 0 1 374 269962 270335 Mycoplasma pulmonis strain NCTC10139 genome assembly, chromosome: 1 blastn 374 680 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;