RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA758087", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA758087 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12213199 12213199 PRJNA758087_P_NODE_36010_length_322_cov_2.301205_g34690_i0 PRJNA758087 36010 322 2.301205 7.4098801 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 315 3.49e-81   NTclustered gi|325195647|emb|FR826438.1| 890382 g34690 i0 88.346 0.826086956521739 266 26 81 4 51 311 8 273 Albugo laibachii Nc14, genomic contig CONTIG_3588_NC14_v4_342_24 blastn 266 315 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21135761 21135761 PRJNA758087_P_NODE_20257_length_608_cov_8.947664_g18952_i0 PRJNA758087 20257 608 8.947664 54.40179712 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 453 1.4100000000000002e-122   NTclustered gi|325195079|emb|FR825873.1| 890382 g18952 i0 86.797 0.720394736842105 409 50 67 4 176 582 2 408 Albugo laibachii Nc14, genomic contig CONTIG_2915_NC14_v4_528_58 blastn 438 453 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
27189039 27189039 PRJNA758087_P_NODE_20082_length_613_cov_2.988889_g18779_i0 PRJNA758087 20082 613 2.988889 18.32188957 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 49.3 0.00117   NR KAG2779018.1 29920 g18779 i0 52.1 0.807504078303426 48 13 18.6 2 478 591 101 148 KAG2779018.1 hypothetical protein PC112_g24999 [Phytophthora cactorum] diamond 495 49.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;