RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA758087" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA758087 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
733557 733557 PRJNA758087_P_NODE_35781_length_325_cov_3.551587_g34461_i0 PRJNA758087 35781 325 3.551587 11.54265775 Acrasis kona 1008807 Heterolobosea other_Eukaryota 111 7.91e-26   NR KAL0480735.1 1008807 g34461 i0 54.1 0.784615384615385 85 39 78.5 0 299 45 558 642 KAL0480735.1 cmfA [Acrasis kona] diamond 255 111 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
10937604 10937604 PRJNA758087_P_NODE_32029_length_379_cov_2.232026_g30709_i0 PRJNA758087 32029 379 2.232026 8.45937854 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.036   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g30709 i0 100 0.0738786279683377 28 0 7 0 349 376 32 5 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
10937640 10937640 PRJNA758087_P_NODE_33489_length_357_cov_3.595070_g32169_i0 PRJNA758087 33489 357 3.59507 12.8343999 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.034   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g32169 i0 100 0.0784313725490196 28 0 8 0 328 355 35 8 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
14762010 14762010 PRJNA758087_P_NODE_15072_length_764_cov_45.531114_g13836_i0 PRJNA758087 15072 764 45.531114 347.85771096 Dinema validum 2704078 Euglenozoa other_Eukaryota 54.7 0.021   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g13836 i0 100 0.0379581151832461 29 0 4 0 728 756 36 8 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 29 54.7 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
21136327 21136327 PRJNA758087_P_NODE_42317_length_248_cov_0.880000_g40997_i0 PRJNA758087 42317 248 0.88 2.1824 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 453 5.2600000000000005e-123   NTclustered gi|2031940710|emb|OD957740.1| 5763 g40997 i0 99.597 1 248 1 100 0 1 248 258 505 Naegleria fowleri Karachi_NF001 strain blastn 248 453 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;