RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA758087", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 11 ✖

tax_clade 1

  • CRuMs · 11 ✖

bioproject 1

  • PRJNA758087 · 11 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5836643 5836643 PRJNA758087_P_NODE_16985_length_699_cov_36.506390_g15720_i0 PRJNA758087 16985 699 36.50639 255.1796661 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 60.2 4.17e-4   NTclustered gi|2733867141|gb|PP812520.1| 440571 g15720 i0 100 0.170243204577969 32 0 5 0 1 32 74 105 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 119 60.2 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
7112445 7112445 PRJNA758087_P_NODE_38706_length_288_cov_1.297674_g37386_i0 PRJNA758087 38706 288 1.297674 3.73730112 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|2733867141|gb|PP812520.1| 440571 g37386 i0 100 0.503472222222222 30 0 10 0 259 288 103 74 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 145 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
8387001 8387001 PRJNA758087_P_NODE_38667_length_288_cov_2.083721_g37347_i0 PRJNA758087 38667 288 2.083721 6.00111648 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|2733867141|gb|PP812520.1| 440571 g37347 i0 100 0.503472222222222 30 0 10 0 1 30 74 103 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 145 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
10937671 10937671 PRJNA758087_P_NODE_34649_length_341_cov_3.261194_g33329_i0 PRJNA758087 34649 341 3.261194 11.12067154 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|2733867141|gb|PP812520.1| 440571 g33329 i0 100 0.425219941348974 30 0 9 0 1 30 74 103 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 145 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
10937717 10937717 PRJNA758087_P_NODE_36369_length_317_cov_2.782787_g35049_i0 PRJNA758087 36369 317 2.782787 8.82143479 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|2733867141|gb|PP812520.1| 440571 g35049 i0 100 0.457413249211356 30 0 9 0 1 30 74 103 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 145 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
12213273 12213273 PRJNA758087_P_NODE_39710_length_276_cov_1.807882_g38390_i0 PRJNA758087 39710 276 1.807882 4.98975432 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 60.2 1.52e-4   NTclustered gi|2733867141|gb|PP812520.1| 440571 g38390 i0 94.737 0.554347826086957 38 2 14 0 1 38 74 111 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 153 60.2 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
14762558 14762558 PRJNA758087_P_NODE_34752_length_340_cov_1.827715_g33432_i0 PRJNA758087 34752 340 1.827715 6.214231 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|2733867141|gb|PP812520.1| 440571 g33432 i0 100 0.426470588235294 30 0 9 0 1 30 74 103 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 145 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
16035578 16035578 PRJNA758087_P_NODE_11093_length_951_cov_9.638952_g9980_i0 PRJNA758087 11093 951 9.638952 91.66643352 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.007   NTclustered gi|2733867141|gb|PP812520.1| 440571 g9980 i0 100 0.123028391167192 30 0 3 0 922 951 103 74 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 117 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
16035956 16035956 PRJNA758087_P_NODE_23253_length_539_cov_2.860515_g21936_i0 PRJNA758087 23253 539 2.860515 15.41817585 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 58.4 0.001   NTclustered gi|2733867141|gb|PP812520.1| 440571 g21936 i0 100 0.226345083487941 31 0 6 0 1 31 74 104 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 122 58.4 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
16036307 16036307 PRJNA758087_P_NODE_3733_length_1728_cov_223.961934_g3149_i0 PRJNA758087 3733 1728 223.961934 3870.06221952 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 58.4 0.004   NTclustered gi|2733867141|gb|PP812520.1| 440571 g3149 i0 97.059 0.0885416666666667 34 1 2 0 1 34 74 107 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 153 58.4 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
21136394 21136394 PRJNA758087_P_NODE_5237_length_1469_cov_78.856734_g4505_i0 PRJNA758087 5237 1469 78.856734 1158.40542246 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 58.4 0.003   NTclustered gi|2733867141|gb|PP812520.1| 440571 g4505 i0 97.143 0.0830496936691627 35 0 2 1 1436 1469 108 74 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 122 58.4 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;