RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA758087" and tax_clade = "Amoebozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA758087 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2478156 2478156 PRJNA758087_P_NODE_34422_length_344_cov_4.512915_g33102_i0 PRJNA758087 34422 344 4.512915 15.5244276 Entamoeba 5758 Evosea other_Eukaryota 52.8 0.033   NTclustered gi|183230490|ref|XM_001913410.1| 294381 g33102 i0 100 0.162790697674419 28 0 8 0 292 319 7978 8005 Entamoeba histolytica HM-1:IMSS uncharacterized protein (EHI_179090), partial mRNA blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
3284788 3284788 PRJNA758087_P_NODE_30463_length_403_cov_6.884848_g29143_i0 PRJNA758087 30463 403 6.884848 27.74593744 Entamoeba histolytica 5759 Evosea other_Eukaryota 224 7.74e-54   NTclustered gi|467633|emb|Z29969.1| 5759 g29143 i0 78.1 4.31265508684864 379 66 93 15 1 374 1015 649 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 1738 224 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
7112338 7112338 PRJNA758087_P_NODE_34546_length_343_cov_1.303704_g33226_i0 PRJNA758087 34546 343 1.303704 4.47170472 Physarum polycephalum 5791 Evosea other_Eukaryota 307 6.270000000000001e-79   NTclustered gi|1478117|gb|L10344.1|SLMRAS 5791 g33226 i0 84.277 1.16618075801749 318 47 92 1 29 343 636 319 Physarum polycephalum ras1 protein (Ppras1) mRNA, complete cds blastn 400 307 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
13486975 13486975 PRJNA758087_P_NODE_19231_length_633_cov_2.080357_g17932_i0 PRJNA758087 19231 633 2.080357 13.16865981 Didymium dubium 289979 Evosea other_Eukaryota 252 5.77e-62   NTclustered gi|381139243|emb|HE655050.1| 289979 g17932 i0 91.848 44.085308056872 184 9 57 5 1 180 1398 1217 Didymium dubium partial 28S rRNA gene, isolate Uk-K77 blastn 27906 252 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium dubium
18585593 18585593 PRJNA758087_P_NODE_40835_length_261_cov_2.356383_g39515_i0 PRJNA758087 40835 261 2.356383 6.15015963 Entamoeba gingivalis 38877 Evosea other_Eukaryota 438 1.5599999999999993e-118   NTclustered gi|2781670134|dbj|LC832206.1| 38877 g39515 i0 100 87.0996168582376 237 0 91 0 1 237 495 259 Entamoeba gingivalis ST2-1_human_Ishikawa_H25_2017 gene for 18S ribosomal RNA, partial sequence blastn 22733 438 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
32906793 32906793 PRJNA758087_P_NODE_20480_length_603_cov_3.786792_g19172_i0 PRJNA758087 20480 603 3.786792 22.83435576 Acytosteliales 2058181 Evosea other_Eukaryota 131 2.2299999999999996e-31   NR XP_004350744.1 261658 g19172 i0 58.7 2.54726368159204 104 42 51.7 1 340 29 579 681 XP_004350744.1 uncharacterized protein DFA_11799 [Cavenderia fasciculata] diamond 1536 131 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;