RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA757618" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA757618 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4561113 4561113 PRJNA757618_P_NODE_40384_length_245_cov_2.063953_g39332_i0 PRJNA757618 40384 245 2.063953 5.05668485 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 387 5.34e-103   NTclustered gi|325195057|emb|FR825852.1| 890382 g39332 i0 95.122 98 246 11 100 1 1 245 405 160 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 24010 387 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
30062633 30062633 PRJNA757618_P_NODE_36211_length_248_cov_0.880000_g35159_i0 PRJNA757618 36211 248 0.88 2.1824 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 45.8 4.51e-4   NR CAI5713765.1 86335 g35159 i0 62.2 2.23790322580645 37 14 44.8 0 12 122 16 52 CAI5713765.1 unnamed protein product [Peronospora destructor] diamond 555 45.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
32117655 32117655 PRJNA757618_P_NODE_19438_length_279_cov_1.276699_g18386_i0 PRJNA757618 19438 279 1.276699 3.56199021 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.1 4.78e-8   NR TMW68031.1 41045 g18386 i0 34.8 4.72043010752688 92 56 94.6 2 1 264 934 1025 TMW68031.1 hypothetical protein Poli38472_007703 [Pythium oligandrum] diamond 1317 60.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;