RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA757618" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA757618 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8386026 8386026 PRJNA757618_P_NODE_43947_length_244_cov_0.906433_g42895_i0 PRJNA757618 43947 244 0.906433 2.21169652 Fimbriimonas 1005038 Bacteria Bacteria 148 1.9499999999999998e-42   NR WP_025226024.1 1005039 g42895 i0 91.1 9.75 79 7 97.1 0 8 244 144 222 WP_025226024.1 ABC transporter ATP-binding protein [Fimbriimonas ginsengisoli] diamond 2379 148 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
8855585 8855585 PRJNA757618_P_NODE_47407_length_242_cov_0.923077_g46355_i0 PRJNA757618 47407 242 0.923077 2.23384634 Armatimonadota bacterium 2033014 Bacteria Bacteria 64.3 6.52e-11   NR MBW3622670.1 2033014 g46355 i0 54 2.00826446280992 63 29 78.1 0 189 1 8 70 MBW3622670.1 phage holin family protein [Armatimonadota bacterium] diamond 486 64.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30337779 30337779 PRJNA757618_P_NODE_34012_length_249_cov_0.880682_g32960_i0 PRJNA757618 34012 249 0.880682 2.19289818 Armatimonadota bacterium 2033014 Bacteria Bacteria 122 9.6e-33   NR MFN3650744.1 2033014 g32960 i0 68.3 0.987951807228916 82 26 98.8 0 248 3 57 138 MFN3650744.1 sigma-70 family RNA polymerase sigma factor [Armatimonadota bacterium] diamond 246 122 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32234589 32234589 PRJNA757618_P_NODE_34318_length_249_cov_0.875000_g33266_i0 PRJNA757618 34318 249 0.875 2.17875 Armatimonadota bacterium 2033014 Bacteria Bacteria 65.5 3.7e-10   NR MBI3946035.1 2033014 g33266 i0 52.6 3.69879518072289 76 36 91.6 0 20 247 299 374 MBI3946035.1 response regulator [Armatimonadota bacterium] diamond 921 65.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32519312 32519312 PRJNA757618_P_NODE_36279_length_248_cov_0.874286_g35227_i0 PRJNA757618 36279 248 0.874286 2.16822928 Armatimonadota bacterium 2033014 Bacteria Bacteria 105 5.0499999999999995e-25   NR MBC8134801.1 2033014 g35227 i0 63.4 0.991935483870968 82 24 96.8 2 241 2 29 106 MBC8134801.1 hypothetical protein [Armatimonadota bacterium] diamond 246 105 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;