RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA757618", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA757618 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23685549 23685549 PRJNA757618_P_NODE_31879_length_250_cov_0.875706_g30827_i0 PRJNA757618 31879 250 0.875706 2.189265 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 63.9 1.45e-9   NR WP_059061076.1 389348 g30827 i0 40.8 0.912 76 45 91.2 0 2 229 1039 1114 WP_059061076.1 RHS repeat-associated core domain-containing protein [Candidatus Protochlamydia naegleriophila] diamond 228 63.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
28505696 28505696 PRJNA757618_P_NODE_37767_length_247_cov_0.890805_g36715_i0 PRJNA757618 37767 247 0.890805 2.20028835 Parachlamydia sp. 2052048 Bacteria Bacteria 117 2.17e-28   NR PJD94378.1 2052048 g36715 i0 64.6 2.91497975708502 79 28 96 0 11 247 151 229 PJD94378.1 MAG: glutamate dehydrogenase [Parachlamydia sp.] diamond 720 117 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;