RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA757618", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA757618 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28253044 28253044 PRJNA757618_P_NODE_49166_length_228_cov_2.012903_g48114_i0 PRJNA757618 49166 228 2.012903 4.5894188400000004 Nippostrongylus brasiliensis 27835 Nematoda Nematoda 52 1.68e-5   NR WKX99052.1 27835 g48114 i0 46.2 2.05263157894737 52 28 68.4 0 158 3 1 52 WKX99052.1 hypothetical protein Q1695_014153 [Nippostrongylus brasiliensis] diamond 468 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
30021508 30021508 PRJNA757618_P_NODE_33391_length_249_cov_0.886364_g32339_i0 PRJNA757618 33391 249 0.886364 2.20704636 Diploscapter pachys 2018661 Nematoda Nematoda 42.7 0.0389   NR PAV65443.1 2018661 g32339 i0 90.9 0.265060240963855 22 2 26.5 0 184 249 203 224 PAV65443.1 hypothetical protein WR25_12533 [Diploscapter pachys] diamond 66 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
32434215 32434215 PRJNA757618_P_NODE_35459_length_248_cov_0.891429_g34407_i0 PRJNA757618 35459 248 0.891429 2.21074392 Rhabditida 6236 Nematoda Nematoda 102 8.79e-24   NR KAE9419412.1 6313 g34407 i0 62.8 12.2661290322581 78 27 94.4 1 236 3 46 121 KAE9419412.1 hypothetical protein Angca_000931 [Angiostrongylus cantonensis] diamond 3042 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;