RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA757618", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA757618 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3283810 3283810 PRJNA757618_P_NODE_27823_length_252_cov_0.871508_g26771_i0 PRJNA757618 27823 252 0.871508 2.19620016 Acrasis kona 1008807 Heterolobosea other_Eukaryota 146 3.15e-42   NR KAL0479151.1 1008807 g26771 i0 89.7 0.928571428571429 78 8 92.9 0 11 244 1 78 KAL0479151.1 ribosomal protein L10 [Acrasis kona] diamond 234 146 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
10936886 10936886 PRJNA757618_P_NODE_6109_length_499_cov_1.640845_g5059_i0 PRJNA757618 6109 499 1.640845 8.18781655 Acrasis rosea 43695 Heterolobosea other_Eukaryota 451 4.11e-122   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g5059 i0 84.076 78.6292585170341 471 71 94 3 1 469 613 1081 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 39236 451 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
18584448 18584448 PRJNA757618_P_NODE_35515_length_248_cov_0.891429_g34463_i0 PRJNA757618 35515 248 0.891429 2.21074392 root 1 Root_unresolved Root_unresolved 135 1.3399999999999996e-34   NR KAL0482770.1 1008807 g34463 i0 78 10.9112903225806 82 18 99.2 0 2 247 618 699 KAL0482770.1 glycine dehydrogenase [Acrasis kona] diamond 2706 135 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
31000918 31000918 PRJNA757618_P_NODE_35654_length_248_cov_0.885714_g34602_i0 PRJNA757618 35654 248 0.885714 2.19657072 Acrasis kona 1008807 Heterolobosea other_Eukaryota 72.4 3.19e-14   NR KAL0483027.1 1008807 g34602 i0 64.8 0.858870967741935 71 23 85.9 2 246 34 12 80 KAL0483027.1 large subunit ribosomal protein LP1 [Acrasis kona] diamond 213 72.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;