RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA757618" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA757618 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4560939 4560939 PRJNA757618_P_NODE_28704_length_252_cov_0.865922_g27652_i0 PRJNA757618 28704 252 0.865922 2.18212344 Didymium spongiosum 289992 Evosea other_Eukaryota 255 1.62e-63   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g27652 i0 85.115 6.22222222222222 262 25 100 10 1 252 7573 7316 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1568 255 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
7580564 7580564 PRJNA757618_P_NODE_7306_length_425_cov_3.082386_g6254_i0 PRJNA757618 7306 425 3.082386 13.1001405 Stemonitidae 137615 Evosea other_Eukaryota 291 7.97e-74   NTclustered gi|358628255|gb|JQ031992.1| 1115720 g6254 i0 85.324 69.5105882352941 293 29 69 8 133 425 1502 1780 Lamproderma scintillans voucher JM3204 18S ribosomal RNA gene, partial sequence blastn 29542 291 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Lamproderma Lamproderma scintillans
11406287 11406287 PRJNA757618_P_NODE_3429_length_1261_cov_3.207912_g2486_i0 PRJNA757618 3429 1261 3.207912 40.45177032 Physariida 5789 Evosea other_Eukaryota 568 1.03e-156   NTclustered gi|2616764609|gb|OR769378.1| 289939 g2486 i0 95.278 47.6661379857256 360 14 58 3 524 881 692 334 Craterium dictyosporum voucher LE286398 small subunit ribosomal RNA gene, partial sequence blastn 60107 569 0.998242530755712 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Craterium Craterium dictyosporum
16034796 16034796 PRJNA757618_P_NODE_10413_length_347_cov_2.452555_g9361_i0 PRJNA757618 10413 347 2.452555 8.51036585 Didymium iridis 5793 Evosea other_Eukaryota 243 1.8200000000000002e-59   NTclustered gi|2687|emb|X60210.1| 5793 g9361 i0 94.34 36.2017291066282 159 7 46 2 3 160 2660 2503 D.iridis LSU rRNA gene blastn 12562 243 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
19054381 19054381 PRJNA757618_P_NODE_7915_length_401_cov_2.652439_g6863_i0 PRJNA757618 7915 401 2.652439 10.63628039 Physariida 5789 Evosea other_Eukaryota 174 7.86e-39   NTclustered gi|2687|emb|X60210.1| 5793 g6863 i0 82.741 1.97007481296758 197 32 49 2 206 401 5257 5062 D.iridis LSU rRNA gene blastn 790 174 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
22410048 22410048 PRJNA757618_P_NODE_4218_length_878_cov_2.357764_g3194_i0 PRJNA757618 4218 878 2.357764 20.70116792 Didymium iridis 5793 Evosea other_Eukaryota 852 0   NTclustered gi|2687|emb|X60210.1| 5793 g3194 i0 84.859 25.8838268792711 885 91 99 29 1 877 1264 2113 D.iridis LSU rRNA gene blastn 22726 852 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;