RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA756891" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA756891 · 13 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3283304 3283304 PRJNA756891_P_NODE_11663_length_256_cov_1.262295_g11594_i0 PRJNA756891 11663 256 1.262295 3.2314752 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 69.3 1.87e-11   NR XP_001319258.1 412133 g11594 i0 54.1 3.1875 61 26 70.3 2 39 218 353 412 XP_001319258.1 protein kinase protein [Trichomonas vaginalis G3] diamond 816 69.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27337513 27337513 PRJNA756891_P_NODE_10103_length_275_cov_1.138614_g10034_i0 PRJNA756891 10103 275 1.138614 3.1311885 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 49.3 2.59e-4   NR XP_067769352.1 135588 g10034 i0 34.6 0.883636363636364 81 47 84 3 40 270 7 85 XP_067769352.1 major facilitator superfamily transporter [Histomonas meleagridis] diamond 243 49.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28547324 28547324 PRJNA756891_P_NODE_10187_length_274_cov_1.213930_g10118_i0 PRJNA756891 10187 274 1.21393 3.3261682 root 1 Root_unresolved Root_unresolved 73.6 3.7e-13   NR XP_001294010.1 412133 g10118 i0 67.4 4.64233576642336 46 15 50.4 0 272 135 178 223 XP_001294010.1 hypothetical protein TVAGG3_0589770 [Trichomonas vaginalis G3] diamond 1272 73.6 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28568758 28568758 PRJNA756891_P_NODE_11567_length_257_cov_1.423913_g11498_i0 PRJNA756891 11567 257 1.423913 3.65945641 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 43.5 0.024   NR KAH0788214.1 135588 g11498 i0 47.7 1.0272373540856 44 23 51.4 0 213 82 855 898 KAH0788214.1 calcium-translocating P-type ATPase, PMCA-type family protein [Histomonas meleagridis] diamond 264 43.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29083951 29083951 PRJNA756891_P_NODE_11008_length_264_cov_1.303665_g10939_i0 PRJNA756891 11008 264 1.303665 3.4416756 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 44.7 0.00675   NR ABA39444.1 5722 g10939 i0 38.6 6.625 70 42 78.4 1 3 209 97 166 ABA39444.1 RasC [Trichomonas vaginalis] diamond 1749 45.1 0.991130820399113 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29651779 29651779 PRJNA756891_P_NODE_470_length_1106_cov_2.574056_g432_i0 PRJNA756891 470 1106 2.574056 28.46905936 root 1 Root_unresolved Root_unresolved 85.5 1.39e-14   NR XP_068363126.1 1144522 g432 i0 34.1 0.767631103074141 138 84 36.6 2 1039 635 21 154 XP_068363126.1 CAMK family protein kinase [Tritrichomonas foetus] diamond 849 85.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29673629 29673629 PRJNA756891_P_NODE_4650_length_391_cov_1.342767_g4581_i0 PRJNA756891 4650 391 1.342767 5.25021897 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 192 7.1e-60   NR XP_001322019.1 412133 g4581 i0 67.4 5.8925831202046 129 42 99 0 387 1 20 148 XP_001322019.1 peptidyl-prolyl cis-trans isomerase protein [Trichomonas vaginalis G3] diamond 2304 192 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29673632 29673632 PRJNA756891_P_NODE_750_length_908_cov_1.444311_g701_i0 PRJNA756891 750 908 1.444311 13.11434388 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 53.1 9.94e-4   NR XP_001312451.1 412133 g701 i0 36.8 0.251101321585903 76 47 24.8 1 330 554 653 728 XP_001312451.1 protein ubiquitination [Trichomonas vaginalis G3] diamond 228 53.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30316048 30316048 PRJNA756891_P_NODE_4172_length_411_cov_1.934911_g4103_i0 PRJNA756891 4172 411 1.934911 7.95248421 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62 3.06e-8   NR XP_001309118.1 412133 g4103 i0 33.3 4.97080291970803 96 62 68.6 1 407 126 23 118 XP_001309118.1 intracellular sterol transport [Trichomonas vaginalis G3] diamond 2043 62 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30653060 30653060 PRJNA756891_P_NODE_15833_length_242_cov_2.727811_g15764_i0 PRJNA756891 15833 242 2.727811 6.60130262 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 67 1.04e-10   NR XP_067771666.1 135588 g15764 i0 46.8 0.954545454545455 77 40 95.5 1 2 232 518 593 XP_067771666.1 Phosphatidylinositol 3- and 4-kinase family protein [Histomonas meleagridis] diamond 231 67 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30906176 30906176 PRJNA756891_P_NODE_2834_length_497_cov_2.653302_g2766_i0 PRJNA756891 2834 497 2.653302 13.18691094 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 74.7 3.44e-13   NR XP_001315127.1 412133 g2766 i0 31.6 1.6056338028169 133 90 79.7 1 397 2 4 136 XP_001315127.1 small GTPase mediated signal transduction [Trichomonas vaginalis G3] diamond 798 74.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31570146 31570146 PRJNA756891_P_NODE_696_length_940_cov_2.557093_g648_i0 PRJNA756891 696 940 2.557093 24.0366742 Tritrichomonas musculus 1915356 Parabasalia other_Eukaryota 109 1.32e-23   NR KAK8835036.1 1915356 g648 i0 27 5.73191489361702 293 176 91 9 860 6 18 280 KAK8835036.1 hypothetical protein M9Y10_019431 [Tritrichomonas musculus] diamond 5388 109 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
31674499 31674499 PRJNA756891_P_NODE_6377_length_338_cov_1.905660_g6308_i0 PRJNA756891 6377 338 1.90566 6.4411308 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 96.3 1.91e-20   NR XP_001305064.1 412133 g6308 i0 51.8 3.0887573964497 85 40 74.6 1 2 253 189 273 XP_001305064.1 protein kinase protein [Trichomonas vaginalis G3] diamond 1044 96.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;