RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA756891" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA756891 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13485775 13485775 PRJNA756891_P_NODE_14131_length_246_cov_0.890173_g14062_i0 PRJNA756891 14131 246 0.890173 2.18982558 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 187 5.839999999999998e-43   NTclustered gi|2108172456|gb|CP070716.1| 2026742 g14062 i0 82.629 3 213 35 86 2 28 239 1846772 1846561 MAG: Gemmatimonadetes bacterium isolate bin486 chromosome blastn 738 187 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
26989409 26989409 PRJNA756891_P_NODE_14402_length_246_cov_0.890173_g14333_i0 PRJNA756891 14402 246 0.890173 2.18982558 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 125 2.58e-33   NR HEV7367156.1 2448054 g14333 i0 86.3 0.975609756097561 80 11 97.6 0 241 2 200 279 HEV7367156.1 DMT family transporter [Gemmatimonadales bacterium] diamond 240 125 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27053019 27053019 PRJNA756891_P_NODE_4442_length_399_cov_1.668712_g4373_i0 PRJNA756891 4442 399 1.668712 6.65816088 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 110 9.23e-26   NR HVK00657.1 2448054 g4373 i0 60.9 13.5037593984962 92 34 67.7 2 110 379 3 94 HVK00657.1 ferrochelatase [Gemmatimonadales bacterium] diamond 5388 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27220543 27220543 PRJNA756891_P_NODE_11002_length_264_cov_1.408377_g10933_i0 PRJNA756891 11002 264 1.408377 3.71811528 Pseudomonadati 3379134 Bacteria Bacteria 103 1.55e-23   NR MEP7347511.1 2026741 g10933 i0 57.5 4.94318181818182 87 36 98.9 1 262 2 99 184 MEP7347511.1 M28 family metallopeptidase [Gemmatimonadaceae bacterium] diamond 1305 104 0.990384615384615 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27748140 27748140 PRJNA756891_P_NODE_12064_length_251_cov_0.865169_g11995_i0 PRJNA756891 12064 251 0.865169 2.17157419 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 118 1.4499999999999998e-31   NR MEO6878498.1 2026741 g11995 i0 61.4 1.9840637450199201 83 32 99.2 0 2 250 56 138 MEO6878498.1 carbonic anhydrase [Gemmatimonadaceae bacterium] diamond 498 118 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30589969 30589969 PRJNA756891_P_NODE_16513_length_241_cov_0.916667_g16444_i0 PRJNA756891 16513 241 0.916667 2.20916747 Longimicrobiales bacterium 2910168 Bacteria Bacteria 88.6 2.58e-18   NR MEQ1855688.1 2910168 g16444 i0 53.2 0.95850622406639 77 36 95.9 0 239 9 504 580 MEQ1855688.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Longimicrobiales bacterium] diamond 231 88.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
31032648 31032648 PRJNA756891_P_NODE_11715_length_255_cov_1.500000_g11646_i0 PRJNA756891 11715 255 1.5 3.825 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 56.2 4.33e-7   NR UCF41094.1 2026742 g11646 i0 43.9 0.776470588235294 66 37 77.6 0 3 200 154 219 UCF41094.1 MAG: chalcone isomerase family protein [Gemmatimonadota bacterium] diamond 198 56.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32550991 32550991 PRJNA756891_P_NODE_16599_length_241_cov_0.916667_g16530_i0 PRJNA756891 16599 241 0.916667 2.20916747 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 120 1.3e-29   NR HEY3011917.1 2448054 g16530 i0 79.2 0.896265560165975 72 12 85.9 1 5 211 28 99 HEY3011917.1 serine/threonine-protein kinase [Gemmatimonadales bacterium] diamond 216 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32865579 32865579 PRJNA756891_P_NODE_15820_length_243_cov_0.900000_g15751_i0 PRJNA756891 15820 243 0.9 2.187 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 138 3.34e-36   NR HEY5441176.1 2026741 g15751 i0 84 3.64197530864198 75 12 92.6 0 17 241 157 231 HEY5441176.1 amidohydrolase [Gemmatimonadaceae bacterium] diamond 885 138 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;