RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA756891" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA756891 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27379070 27379070 PRJNA756891_P_NODE_16543_length_241_cov_0.916667_g16474_i0 PRJNA756891 16543 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 123 7.509999999999999e-31   NR MCL2260245.1 2604144 g16474 i0 72.5 6.97095435684647 80 22 99.6 0 2 241 150 229 MCL2260245.1 diphosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus Fibrimonadales bacterium] diamond 1680 124 0.991935483870968 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Candidatus Fibrimonadales     Candidatus Fibrimonadales bacterium
29926710 29926710 PRJNA756891_P_NODE_13551_length_248_cov_0.880000_g13482_i0 PRJNA756891 13551 248 0.88 2.1824 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 42.7 0.0388   NR MFP4014283.1 2813024 g13482 i0 45.7 0.556451612903226 46 25 55.6 0 203 66 152 197 MFP4014283.1 sigma-54-dependent transcriptional regulator [Chitinispirillaceae bacterium] diamond 138 42.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;