RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA756891" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA756891 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3283368 3283368 PRJNA756891_P_NODE_7763_length_311_cov_1.092437_g7694_i0 PRJNA756891 7763 311 1.092437 3.39747907 Pseudomonadati 3379134 Bacteria Bacteria 158 4.21e-44   NR WP_288030232.1 290513 g7694 i0 68.9 14.8745980707395 103 32 99.4 0 310 2 259 361 WP_288030232.1 glucose-6-phosphate isomerase, partial [Prosthecochloris sp.] diamond 4626 159 0.993710691823899 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp.
30410665 30410665 PRJNA756891_P_NODE_14753_length_245_cov_0.895349_g14684_i0 PRJNA756891 14753 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 88.6 5.37e-19   NR TLU83934.1 1095 g14684 i0 60.9 3.28163265306122 64 25 78.4 0 192 1 58 121 TLU83934.1 MAG: caspase family protein [Chlorobium sp.] diamond 804 88.6 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;