RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA756891", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA756891 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13485776 13485776 PRJNA756891_P_NODE_14231_length_246_cov_0.890173_g14162_i0 PRJNA756891 14231 246 0.890173 2.18982558 Fusobacterium sp. JB021 3064550 Bacteria Bacteria 92 3.34e-20   NR MDP0494545.1 3064550 g14162 i0 56.6 1.01219512195122 83 34 98.8 1 3 245 6 88 MDP0494545.1 arginine deiminase-related protein [Fusobacterium sp. JB021] diamond 249 92 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. JB021
28284452 28284452 PRJNA756891_P_NODE_13366_length_248_cov_0.880000_g13297_i0 PRJNA756891 13366 248 0.88 2.1824 uncultured Fusobacterium sp. 159267 Bacteria Bacteria 42.7 0.00325   NR WP_177160481.1 159267 g13297 i0 65.5 0.350806451612903 29 10 35.1 0 86 172 1 29 WP_177160481.1 DUF4116 domain-containing protein, partial [uncultured Fusobacterium sp.] diamond 87 42.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium uncultured Fusobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;