RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA756891", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA756891 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1202223 1202223 PRJNA756891_P_NODE_4701_length_389_cov_1.379747_g4632_i0 PRJNA756891 4701 389 1.379747 5.36721583 Metamycoplasmataceae 2895623 Bacteria Bacteria 60.2 2.22e-4   NTclustered gi|1563788636|emb|LR214955.1| 2115 g4632 i0 100 0.411311053984576 32 0 8 0 277 308 418805 418836 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 1 blastn 160 60.2 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
25428895 25428895 PRJNA756891_P_NODE_3420_length_452_cov_2.387863_g3352_i0 PRJNA756891 3420 452 2.387863 10.79314076 Spiroplasma 2132 Bacteria Bacteria 54.7 0.012   NTclustered gi|2328117301|dbj|AP026933.1| 2141 g3352 i0 100 0.449115044247788 29 0 6 0 389 417 383319 383291 Spiroplasma ixodetis sHm DNA, complete genome blastn 203 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma ixodetis
32906789 32906789 PRJNA756891_P_NODE_5260_length_370_cov_0.919192_g5191_i0 PRJNA756891 5260 370 0.919192 3.4010104 Acholeplasma 2147 Bacteria Bacteria 64.7 2.76e-9   NR WP_026399476.1 264634 g5191 i0 31 9.84324324324324 126 80 99.7 4 369 1 158 279 WP_026399476.1 molecular chaperone DnaJ [Acholeplasma equifetale] diamond 3642 65.1 0.993855606758833 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma equifetale

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;