RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA756891", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA756891 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26736002 26736002 PRJNA756891_P_NODE_13061_length_249_cov_0.875000_g12992_i0 PRJNA756891 13061 249 0.875 2.17875 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 68.6 2.83e-11   NR RME91009.1 2030809 g12992 i0 43.9 0.987951807228916 82 45 97.6 1 1 243 198 279 RME91009.1 MAG: DUF2236 domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 246 68.6 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30842912 30842912 PRJNA756891_P_NODE_3354_length_457_cov_1.098958_g3286_i0 PRJNA756891 3354 457 1.098958 5.02223806 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 134 2.0899999999999997e-35   NR GMW00929.1 2030809 g3286 i0 44.7 0.984682713347921 150 83 98.5 0 456 7 115 264 GMW00929.1 MAG: short-chain dehydrogenase [Candidatus Hydrogenedentota bacterium] diamond 450 134 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31601708 31601708 PRJNA756891_P_NODE_4596_length_393_cov_1.443750_g4527_i0 PRJNA756891 4596 393 1.44375 5.6739375 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 44.7 0.0365   NR MBI4560196.1 2030809 g4527 i0 32.3 0.709923664122137 93 56 71 4 59 337 74 159 MBI4560196.1 MBL fold metallo-hydrolase [Candidatus Hydrogenedentota bacterium] diamond 279 44.7 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;