RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA753704" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753704 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3282236 3282236 PRJNA753704_P_NODE_103_length_2678_cov_21.001152_g51_i0 PRJNA753704 103 2678 21.001152 562.41085056 Spirochaetota bacterium 2202144 Bacteria Bacteria 154 7.41e-32   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g51 i0 82.486 11.4686333084391 177 30 7 1 608 783 74549 74373 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 30713 154 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
7579999 7579999 PRJNA753704_P_NODE_20906_length_266_cov_3.067358_g20545_i0 PRJNA753704 20906 266 3.067358 8.15917228 Leptospira 171 Bacteria Bacteria 492 1.2099999999999999e-134   NTclustered gi|2777203535|gb|CP162142.1| 3235171 g20545 i0 100 176.225563909774 266 0 100 0 1 266 2717407 2717142 Leptospira iowaensis strain WS39.C2 chromosome 1, complete sequence blastn 46876 492 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira iowaensis
9659564 9659564 PRJNA753704_P_NODE_22808_length_256_cov_1.704918_g22447_i0 PRJNA753704 22808 256 1.704918 4.36459008 Leptospira cinconiae 3235173 Bacteria Bacteria 473 4.189999999999999e-129   NTclustered gi|2777192084|gb|CP162137.1| 3235173 g22447 i0 100 170.78125 256 0 100 0 1 256 754162 753907 Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence blastn 43720 473 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira cinconiae
15230677 15230677 PRJNA753704_P_NODE_9412_length_382_cov_4.045307_g9051_i0 PRJNA753704 9412 382 4.045307 15.45307274 Turneriella 338321 Bacteria Bacteria 571 2.26e-158   NTclustered gi|470489162|ref|NR_076910.1| 29510 g9051 i0 93.798 219.939790575916 387 12 99 5 2 382 1517 1137 Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence blastn 84017 571 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
23684021 23684021 PRJNA753704_P_NODE_18519_length_281_cov_2.245192_g18158_i0 PRJNA753704 18519 281 2.245192 6.30898952 Oceanispirochaeta crateris 2518645 Bacteria Bacteria 93.5 1.53e-14   NTclustered gi|1735511476|gb|CP036150.1| 2518645 g18158 i0 80.469 18.4128113879004 128 20 45 4 16 141 1311788 1311664 Oceanispirochaeta crateris strain K2 chromosome, complete genome blastn 5174 93.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Oceanispirochaeta Oceanispirochaeta crateris
24957563 24957563 PRJNA753704_P_NODE_18680_length_280_cov_1.971014_g18319_i0 PRJNA753704 18680 280 1.971014 5.5188392 Treponema sp. 166 Bacteria Bacteria 70.5 9.73e-12   NR MDR2942850.1 166 g18319 i0 47.6 0.9 84 43 88.9 1 263 15 267 350 MDR2942850.1 response regulator [Treponema sp.] diamond 252 70.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
27021292 27021292 PRJNA753704_P_NODE_27522_length_244_cov_0.912281_g27161_i0 PRJNA753704 27522 244 0.912281 2.22596564 Leptospira wolffii 409998 Bacteria Bacteria 60.8 1.5e-8   NR WP_210414470.1 409998 g27161 i0 52.9 0.627049180327869 51 24 62.7 0 155 3 83 133 WP_210414470.1 alpha/beta fold hydrolase [Leptospira wolffii] diamond 153 60.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira wolffii
31601681 31601681 PRJNA753704_P_NODE_27816_length_243_cov_0.917647_g27455_i0 PRJNA753704 27816 243 0.917647 2.22988221 Spirochaetales bacterium 2026792 Bacteria Bacteria 44.3 0.0106   NR MBN2736923.1 2026792 g27455 i0 32.8 0.827160493827161 67 41 80.2 2 34 228 322 386 MBN2736923.1 HD domain-containing protein [Spirochaetales bacterium] diamond 201 44.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
31927649 31927649 PRJNA753704_P_NODE_25137_length_249_cov_0.886364_g24776_i0 PRJNA753704 25137 249 0.886364 2.20704636 Treponema 157 Bacteria Bacteria 58.5 1.06e-7   NR NLJ46724.1 166 g24776 i0 60 4.33734939759036 45 18 54.2 0 115 249 1 45 NLJ46724.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Treponema sp.] diamond 1080 58.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32361056 32361056 PRJNA753704_P_NODE_27059_length_245_cov_0.906977_g26698_i0 PRJNA753704 27059 245 0.906977 2.22209365 Sphaerochaetaceae bacterium 2791017 Bacteria Bacteria 108 2.61e-25   NR MFA7019182.1 2791017 g26698 i0 90 0.73469387755102 60 6 73.5 0 3 182 666 725 MFA7019182.1 DnaB-like helicase C-terminal domain-containing protein [Sphaerochaetaceae bacterium] diamond 180 108 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae   Sphaerochaetaceae bacterium
32487544 32487544 PRJNA753704_P_NODE_23539_length_253_cov_0.866667_g23178_i0 PRJNA753704 23539 253 0.866667 2.19266751 Rectinemataceae bacterium 3064674 Bacteria Bacteria 45.1 0.00598   NR MDP2816068.1 3064674 g23178 i0 47.9 0.569169960474308 48 24 55.7 1 151 11 47 94 MDP2816068.1 hypothetical protein [Rectinemataceae bacterium] diamond 144 45.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Rectinemataceae   Rectinemataceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;