RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA753704" and tax_phylum = "Rotifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA753704 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24957670 24957670 PRJNA753704_P_NODE_28500_length_242_cov_0.923077_g28139_i0 PRJNA753704 28500 242 0.923077 2.23384634 Trichocerca tenuior 360706 Rotifera other_Eukaryota 442 1.1099999999999995e-119   NTclustered gi|83285212|gb|DQ297759.1| 360706 g28139 i0 99.587 12.6776859504132 242 1 100 0 1 242 345 586 Trichocerca tenuior 28S ribosomal RNA gene, partial sequence blastn 3068 442 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Trichocercidae Trichocerca Trichocerca tenuior
27495352 27495352 PRJNA753704_P_NODE_17843_length_286_cov_1.366197_g17482_i0 PRJNA753704 17843 286 1.366197 3.90732342 Rotaria sp. Silwood2 2762512 Rotifera other_Eukaryota 43.1 0.0472   NR CAF2496659.1 2762512 g17482 i0 33.9 0.65034965034965 62 38 64 2 186 4 575 634 CAF2496659.1 unnamed protein product [Rotaria sp. Silwood2] diamond 186 43.1 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood2
30347643 30347643 PRJNA753704_P_NODE_19312_length_276_cov_1.527094_g18951_i0 PRJNA753704 19312 276 1.527094 4.21477944 Metazoa 33208 Rotifera other_Eukaryota 48.9 3.86e-4   NR CAF1001369.1 249248 g18951 i0 36.8 4.21739130434783 57 34 62 1 274 104 2251 2305 CAF1001369.1 unnamed protein product [Adineta ricciae] diamond 1164 48.9 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
31601680 31601680 PRJNA753704_P_NODE_27516_length_244_cov_0.912281_g27155_i0 PRJNA753704 27516 244 0.912281 2.22596564 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 70.5 3.39e-12   NR CAF3668728.1 2762511 g27155 i0 41.1 2.69262295081967 73 43 89.8 0 219 1 165 237 CAF3668728.1 unnamed protein product [Rotaria sp. Silwood1] diamond 657 70.5 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;