contig_metadata
9 rows where bioproject = "PRJNA753704" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1202076 | 1202076 | PRJNA753704_P_NODE_741_length_1234_cov_8.730405_g524_i0 | PRJNA753704 | 741 | 1234 | 8.730405 | 107.7331977 | Gemmatimonas | 173479 | Bacteria | Bacteria | 2052 | 0 | NTclustered | gi|470475286|ref|NR_076270.1| | 173480 | g524 | i0 | 96.677 | 223.22528363047 | 1234 | 41 | 100 | 0 | 1 | 1234 | 1712 | 479 | Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence | blastn | 275460 | 2052 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas aurantiaca | |
| 2007142 | 2007142 | PRJNA753704_P_NODE_27922_length_243_cov_0.917647_g27561_i0 | PRJNA753704 | 27922 | 243 | 0.917647 | 2.22988221 | Gemmatimonas aurantiaca | 173480 | Bacteria | Bacteria | 355 | 1.49e-93 | NTclustered | gi|226088597|dbj|AP009153.1| | 379066 | g27561 | i0 | 93.004 | 7.05349794238683 | 243 | 17 | 100 | 0 | 1 | 243 | 2062070 | 2062312 | Gemmatimonas aurantiaca T-27 DNA, complete genome | blastn | 1714 | 355 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas aurantiaca | |
| 5834535 | 5834535 | PRJNA753704_P_NODE_12905_length_331_cov_2.244186_g12544_i0 | PRJNA753704 | 12905 | 331 | 2.244186 | 7.42825566 | Gemmatimonas phototrophica | 1379270 | Bacteria | Bacteria | 479 | 1.2099999999999996e-130 | NTclustered | gi|1015602748|gb|CP011454.1| | 1379270 | g12544 | i0 | 93.009 | 152.398791540786 | 329 | 21 | 99 | 2 | 1 | 328 | 2075175 | 2074848 | Gemmatimonas phototrophica strain AP64, complete genome | blastn | 50444 | 479 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas phototrophica | |
| 12210430 | 12210430 | PRJNA753704_P_NODE_12590_length_335_cov_1.309160_g12229_i0 | PRJNA753704 | 12590 | 335 | 1.30916 | 4.385686 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 150 | 5.99e-40 | NR | RMH73596.1 | 2026742 | g12229 | i0 | 61.3 | 0.994029850746269 | 111 | 42 | 99.4 | 1 | 334 | 2 | 323 | 432 | RMH73596.1 MAG: hypothetical protein D6675_02145, partial [Gemmatimonadota bacterium] | diamond | 333 | 150 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 12681702 | 12681702 | PRJNA753704_P_NODE_21290_length_264_cov_2.157068_g20929_i0 | PRJNA753704 | 21290 | 264 | 2.157068 | 5.69465952 | Gemmatimonas | 173479 | Bacteria | Bacteria | 289 | 1.69e-73 | NTclustered | gi|226088597|dbj|AP009153.1| | 379066 | g20929 | i0 | 86.466 | 52.8939393939394 | 266 | 32 | 100 | 4 | 1 | 264 | 4385 | 4122 | Gemmatimonas aurantiaca T-27 DNA, complete genome | blastn | 13964 | 289 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas aurantiaca | |
| 27157216 | 27157216 | PRJNA753704_P_NODE_24662_length_250_cov_1.491525_g24301_i0 | PRJNA753704 | 24662 | 250 | 1.491525 | 3.7288125 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 53.1 | 6.62e-6 | NR | MFN0099432.1 | 2026741 | g24301 | i0 | 73.5 | 1.524 | 34 | 9 | 40.8 | 0 | 104 | 3 | 9 | 42 | MFN0099432.1 SDR family oxidoreductase [Gemmatimonadaceae bacterium] | diamond | 381 | 53.1 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 28925853 | 28925853 | PRJNA753704_P_NODE_24608_length_250_cov_1.762712_g24247_i0 | PRJNA753704 | 24608 | 250 | 1.762712 | 4.40678 | Bacteria | 2 | Bacteria | Bacteria | 50.1 | 7.45e-5 | NR | MCA9751700.1 | 2026742 | g24247 | i0 | 50 | 1.596 | 60 | 26 | 67.2 | 1 | 168 | 1 | 9 | 68 | MCA9751700.1 thioredoxin family protein [Gemmatimonadota bacterium] | diamond | 399 | 50.4 | 0.994047619047619 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 30505169 | 30505169 | PRJNA753704_P_NODE_26333_length_246_cov_2.265896_g25972_i0 | PRJNA753704 | 26333 | 246 | 2.265896 | 5.57410416 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 62.8 | 3.3e-9 | NR | UCF20388.1 | 2026742 | g25972 | i0 | 40.5 | 3.39024390243902 | 74 | 43 | 90.2 | 1 | 235 | 14 | 18 | 90 | UCF20388.1 MAG: AMP-binding protein [Gemmatimonadota bacterium] | diamond | 834 | 62.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 32771021 | 32771021 | PRJNA753704_P_NODE_19200_length_277_cov_1.294118_g18839_i0 | PRJNA753704 | 19200 | 277 | 1.294118 | 3.58470686 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 99.4 | 6.91e-22 | NR | MBK8246466.1 | 2026742 | g18839 | i0 | 84.8 | 2.15523465703971 | 66 | 10 | 71.5 | 0 | 6 | 203 | 386 | 451 | MBK8246466.1 hypothetical protein [Gemmatimonadota bacterium] | diamond | 597 | 99.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;