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contig_metadata

19 rows where bioproject = "PRJNA753704", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 19 ✖

tax_phylum 1

  • Bdellovibrionota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753704 · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5834741 5834741 PRJNA753704_P_NODE_29985_length_229_cov_2.141026_g29624_i0 PRJNA753704 29985 229 2.141026 4.90294954 Peredibacter starrii 28202 Bacteria Bacteria 254 5.22e-63   NTclustered gi|2631252187|gb|CP139487.1| 28202 g29624 i0 88.208 107.423580786026 212 25 93 0 18 229 512268 512479 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 24600 254 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
9659452 9659452 PRJNA753704_P_NODE_12828_length_332_cov_1.992278_g12467_i0 PRJNA753704 12828 332 1.992278 6.61436296 Peredibacter starrii 28202 Bacteria Bacteria 326 1.67e-84   NTclustered gi|2631252187|gb|CP139487.1| 28202 g12467 i0 84.478 152.668674698795 335 46 99 6 1 331 510700 511032 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 50686 326 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
9659474 9659474 PRJNA753704_P_NODE_14188_length_317_cov_1.897541_g13827_i0 PRJNA753704 14188 317 1.897541 6.01520497 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 267 9.74e-67   NTclustered gi|578016248|gb|CP002190.1| 765869 g13827 i0 83.391 9.85488958990536 289 47 91 1 20 307 2300060 2299772 Bdellovibrio bacteriovorus W, complete genome blastn 3124 267 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
10130648 10130648 PRJNA753704_P_NODE_14228_length_316_cov_11.382716_g13867_i0 PRJNA753704 14228 316 11.382716 35.96938256 Bdellovibrio 958 Bacteria Bacteria 435 2.5100000000000003e-117   NTclustered gi|2800924434|gb|CP168967.1| 959 g13867 i0 91.772 44.7310126582278 316 21 99 5 3 316 3504404 3504716 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 14135 435 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
12681792 12681792 PRJNA753704_P_NODE_7450_length_426_cov_3.390935_g7089_i0 PRJNA753704 7450 426 3.390935 14.4453831 Bdellovibrio 958 Bacteria Bacteria 259 2.25e-64   NTclustered gi|2801803968|gb|CP169237.1| 959 g7089 i0 79.545 7.37793427230047 396 55 90 23 13 395 1189662 1189280 Bdellovibrio bacteriovorus strain Bd3 chromosome, complete genome blastn 3143 259 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
15230551 15230551 PRJNA753704_P_NODE_17792_length_286_cov_2.164319_g17431_i0 PRJNA753704 17792 286 2.164319 6.18995234 Bdellovibrio 958 Bacteria Bacteria 239 1.89e-58   NTclustered gi|2801803968|gb|CP169237.1| 959 g17431 i0 89.84 20.0174825174825 187 18 65 1 84 269 3754561 3754747 Bdellovibrio bacteriovorus strain Bd3 chromosome, complete genome blastn 5725 239 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
18583043 18583043 PRJNA753704_P_NODE_6235_length_460_cov_7.400517_g5874_i0 PRJNA753704 6235 460 7.400517 34.0423782 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 217 1.5e-51   NTclustered gi|2800948966|gb|CP168973.1| 959 g5874 i0 75.862 138.845652173913 493 81 100 19 1 460 1676368 1676855 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 63869 217 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
19857987 19857987 PRJNA753704_P_NODE_14316_length_316_cov_1.283951_g13955_i0 PRJNA753704 14316 316 1.283951 4.05728516 Bdellovibrio 958 Bacteria Bacteria 174 3.95e-50   NR WP_340597006.1 3136282 g13955 i0 81.6 5.88607594936709 103 19 97.8 0 311 3 336 438 WP_340597006.1 MFS transporter [Bdellovibrio sp. GT3] diamond 1860 174 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. GT3
26863404 26863404 PRJNA753704_P_NODE_2281_length_724_cov_3.503840_g1946_i0 PRJNA753704 2281 724 3.50384 25.3678016 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 319 8.71e-108   NR MBX9767865.1 2053517 g1946 i0 89.6 0.716850828729282 173 18 71.7 0 206 724 1 173 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 519 319 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27031084 27031084 PRJNA753704_P_NODE_27842_length_243_cov_0.917647_g27481_i0 PRJNA753704 27842 243 0.917647 2.22988221 Bdellovibrio 958 Bacteria Bacteria 102 3.6899999999999996e-23   NR WP_284608231.1 3044166 g27481 i0 69.6 1.7037037037037 69 21 85.2 0 9 215 876 944 WP_284608231.1 hypothetical protein [Bdellovibrio sp. 22V] diamond 414 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 22V
27084566 27084566 PRJNA753704_P_NODE_23802_length_252_cov_1.402235_g23441_i0 PRJNA753704 23802 252 1.402235 3.5336322 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 71.6 8.3e-14   NR MBX3041714.1 2026715 g23441 i0 91.4 0.416666666666667 35 3 41.7 0 147 251 1 35 MBX3041714.1 DUF1428 domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 105 71.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27811230 27811230 PRJNA753704_P_NODE_15744_length_302_cov_3.820961_g15383_i0 PRJNA753704 15744 302 3.820961 11.53930222 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 78.2 2.55e-14   NR MFN8944049.1 2026715 g15383 i0 70.2 3.47682119205298 57 17 56.6 0 172 2 32 88 MFN8944049.1 F0F1 ATP synthase subunit alpha [Pseudobdellovibrionaceae bacterium] diamond 1050 78.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27915470 27915470 PRJNA753704_P_NODE_23505_length_253_cov_0.866667_g23144_i0 PRJNA753704 23505 253 0.866667 2.19266751 Bdellovibrio 958 Bacteria Bacteria 122 2.48e-32   NR WP_063244176.1 959 g23144 i0 68.6 10.1857707509881 86 25 99.6 1 253 2 175 260 WP_063244176.1 GYF domain-containing protein [Bdellovibrio bacteriovorus] diamond 2577 122 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
28284426 28284426 PRJNA753704_P_NODE_12586_length_335_cov_1.507634_g12225_i0 PRJNA753704 12586 335 1.507634 5.0505739 Pigmentibacter ruber 2683196 Bacteria Bacteria 70.1 2.46e-11   NR WP_158999410.1 2683196 g12225 i0 40.8 0.877611940298507 98 51 85.1 3 12 296 114 207 WP_158999410.1 YcaO-like family protein [Pigmentibacter ruber] diamond 294 70.1 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Pigmentibacter Pigmentibacter ruber
28632183 28632183 PRJNA753704_P_NODE_9487_length_381_cov_1.772727_g9126_i0 PRJNA753704 9487 381 1.772727 6.75408987 Bdellovibrio sp. NC 28201 Bacteria Bacteria 87.8 2.98e-18   NR WP_246845436.1 2220073 g9126 i0 44 0.78740157480315 100 55 78 1 377 81 90 189 WP_246845436.1 substrate-binding periplasmic protein [Bdellovibrio sp. NC01] diamond 300 87.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01
29389878 29389878 PRJNA753704_P_NODE_23449_length_253_cov_0.866667_g23088_i0 PRJNA753704 23449 253 0.866667 2.19266751 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 153 9.559999999999998e-42   NR MBK9323180.1 2026715 g23088 i0 94 12.9486166007905 84 5 99.6 0 252 1 464 547 MBK9323180.1 flagellar M-ring protein FliF [Pseudobdellovibrionaceae bacterium] diamond 3276 153 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30432456 30432456 PRJNA753704_P_NODE_20073_length_271_cov_2.484848_g19712_i0 PRJNA753704 20073 271 2.484848 6.73393808 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 169 3.3999999999999997e-48   NR MFN3698126.1 2862747 g19712 i0 92.2 0.996309963099631 90 7 99.6 0 270 1 160 249 MFN3698126.1 chemotaxis protein CheW [Pseudobdellovibrio sp.] diamond 270 169 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
31136692 31136692 PRJNA753704_P_NODE_11915_length_344_cov_1.439114_g11554_i0 PRJNA753704 11915 344 1.439114 4.95055216 Bdellovibrio 958 Bacteria Bacteria 89 8.27e-19   NR WP_415062242.1 28201 g11554 i0 39.5 2.98255813953488 114 69 99.4 0 344 3 11 124 WP_415062242.1 chemotaxis protein CheW [Bdellovibrio sp.] diamond 1026 89.7 0.992196209587514 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
32180933 32180933 PRJNA753704_P_NODE_24038_length_252_cov_0.871508_g23677_i0 PRJNA753704 24038 252 0.871508 2.19620016 Bdellovibrio 958 Bacteria Bacteria 104 5.67e-24   NR MFM6928398.1 28201 g23677 i0 61.4 3.95238095238095 83 32 98.8 0 4 252 381 463 MFM6928398.1 RIP metalloprotease RseP [Bdellovibrio sp.] diamond 996 105 0.990476190476191 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;