RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA753704" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753704 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9659611 9659611 PRJNA753704_P_NODE_27148_length_244_cov_10.461988_g26787_i0 PRJNA753704 27148 244 10.461988 25.52725072 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 311 3.29e-80   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g26787 i0 89.754 536.397540983607 244 24 100 1 1 244 1879407 1879649 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 130881 311 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
11405845 11405845 PRJNA753704_P_NODE_19729_length_273_cov_3.510000_g19368_i0 PRJNA753704 19729 273 3.51 9.5823 Chthonomonas 1077265 Bacteria Bacteria 344 3.69e-90   NTclustered gi|526641997|ref|NR_103994.1| 454171 g19368 i0 90.734 170.864468864469 259 23 95 1 16 273 2838 2580 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 46646 344 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
13484760 13484760 PRJNA753704_P_NODE_14591_length_313_cov_1.950000_g14230_i0 PRJNA753704 14591 313 1.95 6.1035 Fimbriimonas sp. 1936159 Bacteria Bacteria 403 7.02e-108   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g14230 i0 90.26 197.702875399361 308 30 98 0 6 313 1688906 1688599 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 61881 403 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
19858104 19858104 PRJNA753704_P_NODE_24576_length_250_cov_2.259887_g24215_i0 PRJNA753704 24576 250 2.259887 5.6497175 Armatimonadetes bacterium Uphvl-Ar2 2004468 Bacteria Bacteria 219 2.11e-52   NTclustered gi|1199101103|gb|CP021424.1| 2004468 g24215 i0 82.8 29.936 250 38 100 4 1 250 2202239 2201995 Armatimonadetes bacterium Uphvl-Ar2 genome blastn 7484 219 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2
20328458 20328458 PRJNA753704_P_NODE_18596_length_280_cov_19.628019_g18235_i0 PRJNA753704 18596 280 19.628019 54.9584532 Chthonomonas 1077265 Bacteria Bacteria 285 2.34e-72   NTclustered gi|526641997|ref|NR_103994.1| 454171 g18235 i0 85.409 242.410714285714 281 34 99 7 3 278 289 11 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 67875 285 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
27621729 27621729 PRJNA753704_P_NODE_18124_length_284_cov_1.327014_g17763_i0 PRJNA753704 18124 284 1.327014 3.76871976 Armatimonas sp. 1872638 Bacteria Bacteria 82.8 3.85e-16   NR WP_309722092.1 1872638 g17763 i0 44.2 1.86971830985915 86 43 90.8 1 17 274 171 251 WP_309722092.1 DUF4419 domain-containing protein [Armatimonas sp.] diamond 531 82.8 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae Armatimonas Armatimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;