contig_metadata
17 rows where bioproject = "PRJNA753704", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 730986 | 730986 | PRJNA753704_P_NODE_21681_length_262_cov_1.941799_g21320_i0 | PRJNA753704 | 21681 | 262 | 1.941799 | 5.08751338 | Candidatus Nitrospira kreftii | 2652173 | Bacteria | Bacteria | 335 | 2.119999999999999e-87 | NTclustered | gi|1884724763|gb|CP047423.1| | 2652173 | g21320 | i0 | 90.272 | 13.408396946564901 | 257 | 23 | 98 | 2 | 1 | 256 | 3549419 | 3549674 | Candidatus Nitrospira kreftii isolate comreactor17 chromosome, complete genome | blastn | 3513 | 335 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Candidatus Nitrospira kreftii | ||
| 2007115 | 2007115 | PRJNA753704_P_NODE_25322_length_249_cov_0.886364_g24961_i0 | PRJNA753704 | 25322 | 249 | 0.886364 | 2.20704636 | Nitrospira tepida | 2973512 | Bacteria | Bacteria | 193 | 1.27e-44 | NTclustered | gi|2526808154|emb|OX365700.1| | 2973512 | g24961 | i0 | 93.798 | 52.3052208835341 | 129 | 7 | 51 | 1 | 108 | 235 | 1825662 | 1825534 | Nitrospira sp. DNF genome assembly, chromosome: NsDNF | blastn | 13024 | 193 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira tepida | ||
| 4559474 | 4559474 | PRJNA753704_P_NODE_20564_length_268_cov_2.994872_g20203_i0 | PRJNA753704 | 20564 | 268 | 2.994872 | 8.02625696 | Candidatus Nitrospira kreftii | 2652173 | Bacteria | Bacteria | 348 | 2.79e-91 | NTclustered | gi|1884724763|gb|CP047423.1| | 2652173 | g20203 | i0 | 96.226 | 25.160447761194 | 212 | 8 | 79 | 0 | 57 | 268 | 3603892 | 3604103 | Candidatus Nitrospira kreftii isolate comreactor17 chromosome, complete genome | blastn | 6743 | 348 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Candidatus Nitrospira kreftii | ||
| 5834735 | 5834735 | PRJNA753704_P_NODE_29285_length_235_cov_2.765432_g28924_i0 | PRJNA753704 | 29285 | 235 | 2.765432 | 6.4987652 | Nitrospira tepida | 2973512 | Bacteria | Bacteria | 206 | 1.53e-48 | NTclustered | gi|2526808154|emb|OX365700.1| | 2973512 | g28924 | i0 | 82.937 | 90.2085106382979 | 252 | 20 | 99 | 13 | 1 | 233 | 1318240 | 1317993 | Nitrospira sp. DNF genome assembly, chromosome: NsDNF | blastn | 21199 | 206 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira tepida | ||
| 11405851 | 11405851 | PRJNA753704_P_NODE_20449_length_269_cov_1.591837_g20088_i0 | PRJNA753704 | 20449 | 269 | 1.591837 | 4.28204153 | Nitrospira | 1234 | Bacteria | Bacteria | 438 | 1.6199999999999996e-118 | NTclustered | gi|922305621|gb|CP011801.1| | 42253 | g20088 | i0 | 96.935 | 147.568773234201 | 261 | 8 | 97 | 0 | 1 | 261 | 1277851 | 1277591 | Nitrospira moscoviensis strain NSP M-1, complete genome | blastn | 39696 | 438 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira moscoviensis | ||
| 12210477 | 12210477 | PRJNA753704_P_NODE_15870_length_301_cov_5.057018_g15509_i0 | PRJNA753704 | 15870 | 301 | 5.057018 | 15.22162418 | Nitrospira tepida | 2973512 | Bacteria | Bacteria | 435 | 2.38e-117 | NTclustered | gi|2526808154|emb|OX365700.1| | 2973512 | g15509 | i0 | 92.691 | 258.016611295681 | 301 | 22 | 100 | 0 | 1 | 301 | 1826256 | 1826556 | Nitrospira sp. DNF genome assembly, chromosome: NsDNF | blastn | 77663 | 435 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira tepida | ||
| 12210684 | 12210684 | PRJNA753704_P_NODE_6490_length_453_cov_1.231579_g6129_i0 | PRJNA753704 | 6490 | 453 | 1.231579 | 5.57905287 | Candidatus Manganitrophaceae bacterium | 2932367 | Bacteria | Bacteria | 196 | 1.92e-45 | NTclustered | gi|2874254047|emb|OY970371.1| | 2932367 | g6129 | i0 | 85.052 | 63.3399558498896 | 194 | 27 | 43 | 2 | 261 | 453 | 2246916 | 2247108 | MAG: Candidatus Manganitrophaceae bacterium isolate MFD03066.bin.c.2 genome assembly, chromosome: 1 | blastn | 28693 | 196 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Candidatus Troglogloeales | Candidatus Manganitrophaceae | Candidatus Manganitrophaceae bacterium | |||
| 13484756 | 13484756 | PRJNA753704_P_NODE_1431_length_913_cov_4.779762_g1126_i0 | PRJNA753704 | 1431 | 913 | 4.779762 | 43.63922706 | Nitrospira tepida | 2973512 | Bacteria | Bacteria | 1445 | 0 | NTclustered | gi|2526808154|emb|OX365700.1| | 2973512 | g1126 | i0 | 95.28 | 132.812705366922 | 911 | 43 | 99 | 0 | 1 | 911 | 1826757 | 1827667 | Nitrospira sp. DNF genome assembly, chromosome: NsDNF | blastn | 121258 | 1445 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira tepida | ||
| 19053792 | 19053792 | PRJNA753704_P_NODE_2295_length_722_cov_2.305085_g1960_i0 | PRJNA753704 | 2295 | 722 | 2.305085 | 16.6427137 | Thermodesulfovibrio | 28261 | Bacteria | Bacteria | 56.5 | 0.006 | NTclustered | gi|470483621|ref|NR_076603.1| | 28262 | g1960 | i0 | 92.5 | 1.62049861495845 | 40 | 2 | 6 | 1 | 673 | 712 | 522 | 484 | Thermodesulfovibrio yellowstonii strain YP87 23S ribosomal RNA gene, complete sequence | blastn | 1170 | 56.5 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Thermodesulfovibrionia | Thermodesulfovibrionales | Thermodesulfovibrionaceae | Thermodesulfovibrio | Thermodesulfovibrio yellowstonii | ||
| 21133574 | 21133574 | PRJNA753704_P_NODE_18857_length_279_cov_1.514563_g18496_i0 | PRJNA753704 | 18857 | 279 | 1.514563 | 4.22563077 | Nitrospira tepida | 2973512 | Bacteria | Bacteria | 477 | 3.5799999999999985e-130 | NTclustered | gi|2526808154|emb|OX365700.1| | 2973512 | g18496 | i0 | 97.491 | 244.598566308244 | 279 | 7 | 100 | 0 | 1 | 279 | 1828014 | 1828292 | Nitrospira sp. DNF genome assembly, chromosome: NsDNF | blastn | 68243 | 477 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira tepida | ||
| 24153667 | 24153667 | PRJNA753704_P_NODE_17339_length_289_cov_3.412037_g16978_i0 | PRJNA753704 | 17339 | 289 | 3.412037 | 9.86078693 | Nitrospira | 1234 | Bacteria | Bacteria | 484 | 2.2299999999999998e-132 | NTclustered | gi|2511640680|gb|CP126121.1| | 70125 | g16978 | i0 | 96.886 | 17.8754325259516 | 289 | 9 | 100 | 0 | 1 | 289 | 2738131 | 2737843 | MAG: Nitrospira sp. isolate bin_001 chromosome, complete genome | blastn | 5166 | 484 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 26682782 | 26682782 | PRJNA753704_P_NODE_24721_length_250_cov_0.881356_g24360_i0 | PRJNA753704 | 24721 | 250 | 0.881356 | 2.20339 | Nitrospira | 1234 | Bacteria | Bacteria | 131 | 2.42e-35 | NR | WP_086426417.1 | 96242 | g24360 | i0 | 83.1 | 1.848 | 77 | 13 | 92.4 | 0 | 1 | 231 | 215 | 291 | WP_086426417.1 Mrp/NBP35 family ATP-binding protein [Nitrospira cf. moscoviensis SBR1015] | diamond | 462 | 131 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira cf. moscoviensis SBR1015 | ||
| 26768073 | 26768073 | PRJNA753704_P_NODE_25301_length_249_cov_0.886364_g24940_i0 | PRJNA753704 | 25301 | 249 | 0.886364 | 2.20704636 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 151 | 2.88e-42 | NR | MEZ4244304.1 | 70125 | g24940 | i0 | 92.7 | 0.987951807228916 | 82 | 6 | 98.8 | 0 | 248 | 3 | 138 | 219 | MEZ4244304.1 dihydroxy-acid dehydratase [Nitrospira sp.] | diamond | 246 | 151 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 30274343 | 30274343 | PRJNA753704_P_NODE_25172_length_249_cov_0.886364_g24811_i0 | PRJNA753704 | 25172 | 249 | 0.886364 | 2.20704636 | Nitrospira sp. BO4 | 2944935 | Bacteria | Bacteria | 45.8 | 0.00258 | NR | MDK2741970.1 | 2944935 | g24811 | i0 | 42.9 | 0.674698795180723 | 56 | 31 | 67.5 | 1 | 82 | 249 | 3 | 57 | MDK2741970.1 hypothetical protein [Nitrospira sp. BO4] | diamond | 168 | 45.8 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. BO4 | ||
| 30306150 | 30306150 | PRJNA753704_P_NODE_26492_length_246_cov_0.901734_g26131_i0 | PRJNA753704 | 26492 | 246 | 0.901734 | 2.21826564 | Nitrospira sp. WS110 | 2039811 | Bacteria | Bacteria | 136 | 2.7599999999999997e-37 | NR | NGZ96292.1 | 2039811 | g26131 | i0 | 82.9 | 1.98780487804878 | 82 | 14 | 100 | 0 | 1 | 246 | 187 | 268 | NGZ96292.1 NAD-dependent dehydratase [Nitrospira sp. WS110] | diamond | 489 | 136 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. WS110 | ||
| 31032639 | 31032639 | PRJNA753704_P_NODE_4275_length_544_cov_2.450106_g3916_i0 | PRJNA753704 | 4275 | 544 | 2.450106 | 13.32857664 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 190 | 1.35e-56 | NR | HNA85763.1 | 70125 | g3916 | i0 | 53 | 0.998161764705882 | 181 | 85 | 99.8 | 0 | 544 | 2 | 5 | 185 | HNA85763.1 hypothetical protein [Nitrospira sp.] | diamond | 543 | 190 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 31095492 | 31095492 | PRJNA753704_P_NODE_24635_length_250_cov_1.683616_g24274_i0 | PRJNA753704 | 24635 | 250 | 1.683616 | 4.20904 | Nitrospira sp. WS238 | 2039812 | Bacteria | Bacteria | 123 | 4.41e-31 | NR | NGZ03672.1 | 2039812 | g24274 | i0 | 96.8 | 0.756 | 63 | 2 | 75.6 | 0 | 190 | 2 | 1 | 63 | NGZ03672.1 adenylosuccinate lyase [Nitrospira sp. WS238] | diamond | 189 | 123 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. WS238 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;