RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA753704", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA753704 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2006971 2006971 PRJNA753704_P_NODE_13062_length_329_cov_3.464844_g12701_i0 PRJNA753704 13062 329 3.464844 11.39933676 uncultured delta proteobacterium 34034 Bacteria Bacteria 337 7.63e-88   NTclustered gi|374854163|dbj|AP011765.1| 34034 g12701 i0 85.538 124.468085106383 325 43 98 4 8 329 13653 13330 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 40950 337 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
32139365 32139365 PRJNA753704_P_NODE_24018_length_252_cov_0.871508_g23657_i0 PRJNA753704 24018 252 0.871508 2.19620016 Olavius algarvensis associated proteobacterium Delta 3 426688 Bacteria Bacteria 40 0.0408   NR CAB5160703.1 426688 g23657 i0 52.9 0.404761904761905 34 16 40.5 0 118 17 13 46 CAB5160703.1 hypothetical protein D3OALGA1CA_5041 [Olavius algarvensis associated proteobacterium Delta 3] diamond 102 40 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis associated proteobacterium Delta 3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;