RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA753704", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA753704 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9659622 9659622 PRJNA753704_P_NODE_28408_length_242_cov_0.923077_g28047_i0 PRJNA753704 28408 242 0.923077 2.23384634 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 139 1.0499999999999999e-40   NR CEP03336.1 37360 g28047 i0 81.3 14.8512396694215 80 15 99.2 0 2 241 19 98 CEP03336.1 hypothetical protein PBRA_003096 [Plasmodiophora brassicae] diamond 3594 139 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27716686 27716686 PRJNA753704_P_NODE_21944_length_261_cov_1.212766_g21583_i0 PRJNA753704 21944 261 1.212766 3.16531926 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 97.4 8.06e-22   NR CEP00641.1 37360 g21583 i0 60.8 1.70114942528736 74 29 85.1 0 2 223 22 95 CEP00641.1 hypothetical protein PBRA_001695 [Plasmodiophora brassicae] diamond 444 97.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;