RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA753704", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA753704 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30495398 30495398 PRJNA753704_P_NODE_26893_length_245_cov_0.906977_g26532_i0 PRJNA753704 26893 245 0.906977 2.22209365 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 79 6.97e-15   NR MCG3177013.1 2035772 g26532 i0 53.6 2.68163265306122 69 32 84.5 0 244 38 263 331 MCG3177013.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 657 79 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32560747 32560747 PRJNA753704_P_NODE_27539_length_244_cov_0.912281_g27178_i0 PRJNA753704 27539 244 0.912281 2.22596564 root 1 Root_unresolved Root_unresolved 118 1.9499999999999999e-31   NR MBI4708247.1 2035772 g27178 i0 66.3 1.9672131147541 80 27 98.4 0 2 241 76 155 MBI4708247.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 480 119 0.991596638655462 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32802533 32802533 PRJNA753704_P_NODE_27800_length_243_cov_0.917647_g27439_i0 PRJNA753704 27800 243 0.917647 2.22988221 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 50.8 3.48e-6   NR MEI7999104.1 2035772 g27439 i0 47.2 0.444444444444444 36 19 44.4 0 136 243 11 46 MEI7999104.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 108 50.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;