RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA753704" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 6 ✖

bioproject 1

  • PRJNA753704 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3282397 3282397 PRJNA753704_P_NODE_24323_length_251_cov_0.876404_g23962_i0 PRJNA753704 24323 251 0.876404 2.19977404 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 137 1.5599999999999998e-35   NR KAJ5068560.1 1746090 g23962 i0 80.5 0.9800796812749 82 16 98 0 246 1 242 323 KAJ5068560.1 hypothetical protein M0811_02502 [Anaeramoeba ignava] diamond 246 137 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
29294989 29294989 PRJNA753704_P_NODE_10609_length_363_cov_1.600000_g10248_i0 PRJNA753704 10609 363 1.6 5.808 Blattamonas nauphoetae 2049346 Preaxostyla other_Eukaryota 85.5 2.42e-18   NR KAK2944236.1 2049346 g10248 i0 51.2 1.38842975206612 84 31 62 2 234 10 28 110 KAK2944236.1 hypothetical protein BLNAU_20846 [Blattamonas nauphoetae] diamond 504 85.5 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida   Blattamonas Blattamonas nauphoetae
29936490 29936490 PRJNA753704_P_NODE_24371_length_251_cov_0.876404_g24010_i0 PRJNA753704 24371 251 0.876404 2.19977404 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.8 0.00336   NR XP_001709367.1 5741 g24010 i0 31.7 1.32669322709163 63 43 75.3 0 52 240 422 484 XP_001709367.1 High cysteine membrane protein Group 1 [Giardia intestinalis] diamond 333 46.2 0.991341991341991 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
30274341 30274341 PRJNA753704_P_NODE_21892_length_261_cov_1.638298_g21531_i0 PRJNA753704 21892 261 1.638298 4.27595778 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 44.3 0.0142   NR KAJ4462339.1 342808 g21531 i0 37 0.931034482758621 81 38 87.4 5 4 231 360 432 KAJ4462339.1 putative tenascin precursor [Paratrimastix pyriformis] diamond 243 44.3 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
30779605 30779605 PRJNA753704_P_NODE_16614_length_295_cov_2.112613_g16253_i0 PRJNA753704 16614 295 2.112613 6.23220835 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 70.1 1.4e-11   NR KAG9394805.1 201153 g16253 i0 44 1.64745762711864 75 42 76.3 0 249 25 12 86 KAG9394805.1 Chromo (CHRromatin Organization MOdifier) domain [Carpediemonas membranifera] diamond 486 70.1 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
31601671 31601671 PRJNA753704_P_NODE_18236_length_283_cov_1.709524_g17875_i0 PRJNA753704 18236 283 1.709524 4.83795292 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 73.9 6.38e-13   NR KAJ4460223.1 342808 g17875 i0 46.3 0.869257950530035 82 38 80.6 1 280 53 311 392 KAJ4460223.1 putative RNA-binding protein [Paratrimastix pyriformis] diamond 246 73.9 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;