RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA753704", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Collieribacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Collieribacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA753704 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29200476 29200476 PRJNA753704_P_NODE_28209_length_242_cov_1.840237_g27848_i0 PRJNA753704 28209 242 1.840237 4.45337354 Candidatus Collierbacteria bacterium GW2 2053540 Bacteria Bacteria 64.7 1.91e-10   NR KKS94594.1 1618390 g27848 i0 71.1 0.471074380165289 38 11 47.1 0 127 240 3 40 KKS94594.1 MAG: Metallo-beta-lactamase family protein [Candidatus Collierbacteria bacterium GW2011_GWC2_43_12] diamond 114 64.7 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium GW2011_GWC2_43_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;