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contig_metadata

15 rows where bioproject = "PRJNA753704", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 15 ✖

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA753704 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3282520 3282520 PRJNA753704_P_NODE_7803_length_416_cov_6.212828_g7442_i0 PRJNA753704 7803 416 6.212828 25.84536448 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 625 1.8799999999999998e-174   NTclustered gi|909719645|gb|KT185625.1| 5778 g7442 i0 93.75 1 416 26 100 0 1 416 199 614 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 416 625 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5834615 5834615 PRJNA753704_P_NODE_20005_length_271_cov_81.196970_g19644_i0 PRJNA753704 20005 271 81.19697 220.0437887 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 307 4.8e-79   NTclustered gi|292559443|ref|NC_013986.1| 5778 g19644 i0 94.472 46.1143911439114 199 11 73 0 1 199 27236 27038 Hartmannella vermiformis mitochondrion, complete genome blastn 12497 307 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10130635 10130635 PRJNA753704_P_NODE_11308_length_352_cov_1.677419_g10947_i0 PRJNA753704 11308 352 1.677419 5.90451488 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 176 3.56e-49   NR YP_003540848.1 5778 g10947 i0 93.7 1.61931818181818 95 6 81 0 68 352 385 479 YP_003540848.1 NADH dehydrogenase subunit 5 [Vermamoeba vermiformis] diamond 570 176 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13484819 13484819 PRJNA753704_P_NODE_19611_length_274_cov_1.995025_g19250_i0 PRJNA753704 19611 274 1.995025 5.4663685 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 204 6.569999999999999e-48   NTclustered gi|909719647|gb|KT185627.1| 5778 g19250 i0 80.292 1 274 51 99 3 2 274 24880 25151 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 274 204 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16033737 16033737 PRJNA753704_P_NODE_26773_length_245_cov_1.813953_g26412_i0 PRJNA753704 26773 245 1.813953 4.44418485 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 137 7.29e-39   NR YP_003540833.1 5778 g26412 i0 77.2 1.93469387755102 79 18 96.7 0 237 1 47 125 YP_003540833.1 NADH dehydrogenase subunit 9 [Vermamoeba vermiformis] diamond 474 137 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16033835 16033835 PRJNA753704_P_NODE_7113_length_435_cov_1.781768_g6752_i0 PRJNA753704 7113 435 1.781768 7.7506908 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 599 1.1999999999999995e-166   NTclustered gi|909719647|gb|KT185627.1| 5778 g6752 i0 96.919 65.216091954023 357 11 82 0 1 357 20630 20274 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 28369 599 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17309096 17309096 PRJNA753704_P_NODE_14654_length_312_cov_6.979079_g14293_i0 PRJNA753704 14654 312 6.979079 21.774726480000002 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 549 8.489999999999997e-152   NTclustered gi|909719645|gb|KT185625.1| 5778 g14293 i0 98.397 26.5865384615385 312 5 100 0 1 312 6746 7057 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 8295 549 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17309106 17309106 PRJNA753704_P_NODE_15314_length_306_cov_4.330472_g14953_i0 PRJNA753704 15314 306 4.330472 13.25124432 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 429 1.13e-115   NTclustered gi|909719645|gb|KT185625.1| 5778 g14953 i0 91.883 1.00653594771242 308 23 100 2 1 306 935 628 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 308 429 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17309158 17309158 PRJNA753704_P_NODE_20534_length_268_cov_7.579487_g20173_i0 PRJNA753704 20534 268 7.579487 20.31302516 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 457 4.45e-124   NTclustered gi|909719647|gb|KT185627.1| 5778 g20173 i0 97.388 167.481343283582 268 7 100 0 1 268 28352 28085 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 44885 457 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18582915 18582915 PRJNA753704_P_NODE_21255_length_264_cov_3.204188_g20894_i0 PRJNA753704 21255 264 3.204188 8.45905632 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 174 4.44e-51   NR YP_003540834.1 5778 g20894 i0 96.6 0.988636363636364 87 3 98.9 0 263 3 56 142 YP_003540834.1 NADH dehydrogenase subunit 7 [Vermamoeba vermiformis] diamond 261 174 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18583048 18583048 PRJNA753704_P_NODE_6655_length_448_cov_1.288000_g6294_i0 PRJNA753704 6655 448 1.288 5.77024 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 390 8.089999999999999e-104   NTclustered gi|909719647|gb|KT185627.1| 5778 g6294 i0 82.405 9.48883928571429 449 77 100 2 1 448 1184 1631 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 4251 390 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21604197 21604197 PRJNA753704_P_NODE_2077_length_754_cov_12.362702_g1745_i0 PRJNA753704 2077 754 12.362702 93.21477308 Vermamoeba 1260114 Tubulinea other_Eukaryota 1343 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g1745 i0 98.806 98.0477453580902 754 9 100 0 1 754 4885 5638 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 73928 1343 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26926355 26926355 PRJNA753704_P_NODE_27202_length_244_cov_2.701754_g26841_i0 PRJNA753704 27202 244 2.701754 6.59227976 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 146 2.63e-39   NR YP_003540812.1 5778 g26841 i0 96.3 0.983606557377049 80 3 98.4 0 3 242 65 144 YP_003540812.1 ATP synthase F1 subunit alpha [Vermamoeba vermiformis] diamond 240 146 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30906157 30906157 PRJNA753704_P_NODE_27174_length_244_cov_3.777778_g26813_i0 PRJNA753704 27174 244 3.777778 9.21777832 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 78.6 2.23e-16   NR YP_003540821.1 5778 g26813 i0 86 1.05737704918033 43 6 52.9 0 244 116 96 138 YP_003540821.1 ribosomal protein L16 [Vermamoeba vermiformis] diamond 258 78.6 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32487548 32487548 PRJNA753704_P_NODE_27759_length_243_cov_1.541176_g27398_i0 PRJNA753704 27759 243 1.541176 3.74505768 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 119 5.459999999999999e-31   NR YP_003540842.1 5778 g27398 i0 96.9 0.790123456790123 64 2 79 0 192 1 117 180 YP_003540842.1 cytochrome c oxidase subunit 3 [Vermamoeba vermiformis] diamond 192 119 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;