RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA753151", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753151 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19857418 19857418 PRJNA753151_S_NODE_292236_length_162_cov_17.907563_g289946_i0 PRJNA753151 292236 162 17.907563 29.01025206 Leptospira sp. GIMC2001 1513297 Bacteria Bacteria 56.5 0.001   NTclustered gi|2440388381|gb|CP115468.1| 1513297 g289946 i0 100 0.185185185185185 30 0 19 0 9 38 3182296 3182267 Leptospira sp. GIMC2001 chromosome 1, complete sequence blastn 30 56.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira sp. GIMC2001
24153528 24153528 PRJNA753151_S_NODE_229599_length_188_cov_9.262069_g227309_i0 PRJNA753151 229599 188 9.262069 17.41268972 Borrelia 138 Bacteria Bacteria 52.8 0.016   NTclustered gi|2668652688|gb|CP129313.1| 142 g227309 i0 100 0.297872340425532 28 0 15 0 83 110 11682 11655 Borrelia turicatae strain BTCAM1 plasmid lp32, complete sequence blastn 56 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia turicatae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;