contig_metadata
36 rows where bioproject = "PRJNA753151" and tax_phylum = "Kitrinoviricota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 729337 | 729337 | PRJNA753151_S_NODE_111741_length_270_cov_3.171806_g109451_i0 | PRJNA753151 | 111741 | 270 | 3.171806 | 8.5638762 | Pestivirus bovis | 3052619 | Viruses | Viruses | 446 | 9.719999999999998e-121 | NTclustered | gi|2553477538|gb|OR004812.1| | 11099 | g109451 | i0 | 96.642 | 99.1037037037037 | 268 | 9 | 99 | 0 | 3 | 270 | 2991 | 3258 | Bovine viral diarrhea virus 1 isolate TJ2108, complete genome | blastn | 26758 | 446 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 729781 | 729781 | PRJNA753151_S_NODE_196941_length_206_cov_1.932515_g194651_i0 | PRJNA753151 | 196941 | 206 | 1.932515 | 3.9809809 | Pestivirus bovis | 3052619 | Viruses | Viruses | 344 | 2.6499999999999998e-90 | NTclustered | gi|1523731873|gb|MH490943.1| | 981676 | g194651 | i0 | 97.059 | 99.0097087378641 | 204 | 6 | 99 | 0 | 1 | 204 | 10733 | 10936 | Bovine viral diarrhea virus 1b strain BVDV BJ-2016, complete genome | blastn | 20396 | 344 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 2006123 | 2006123 | PRJNA753151_S_NODE_241822_length_183_cov_1.285714_g239532_i0 | PRJNA753151 | 241822 | 183 | 1.285714 | 2.35285662 | Pestivirus bovis | 3052619 | Viruses | Viruses | 309 | 8.38e-80 | NTclustered | gi|887497285|gb|KR029825.1| | 11099 | g239532 | i0 | 97.253 | 98.7213114754098 | 182 | 5 | 99 | 0 | 2 | 183 | 5375 | 5556 | Bovine viral diarrhea virus 1 isolate Egy/Ismailia/2014, complete genome | blastn | 18066 | 309 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4558025 | 4558025 | PRJNA753151_S_NODE_161444_length_228_cov_35.686486_g159154_i0 | PRJNA753151 | 161444 | 228 | 35.686486 | 81.36518808 | Pestivirus bovis | 3052619 | Viruses | Viruses | 401 | 1.7499999999999993e-107 | NTclustered | gi|216360880|gb|FJ431195.1| | 11099 | g159154 | i0 | 98.673 | 99.8245614035088 | 226 | 3 | 99 | 0 | 3 | 228 | 972 | 747 | Bovine viral diarrhea virus 1 isolate 99 nonfunctional polyprotein gene, partial sequence | blastn | 22760 | 401 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 5030146 | 5030146 | PRJNA753151_S_NODE_174144_length_220_cov_2.135593_g171854_i0 | PRJNA753151 | 174144 | 220 | 2.135593 | 4.6983046 | Pestivirus | 11095 | Viruses | Viruses | 363 | 7.92e-96 | NTclustered | gi|2553477538|gb|OR004812.1| | 11099 | g171854 | i0 | 96.364 | 98.9909090909091 | 220 | 8 | 100 | 0 | 1 | 220 | 10089 | 9870 | Bovine viral diarrhea virus 1 isolate TJ2108, complete genome | blastn | 21778 | 363 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6306000 | 6306000 | PRJNA753151_S_NODE_73825_length_317_cov_3.773723_g71535_i0 | PRJNA753151 | 73825 | 317 | 3.773723 | 11.96270191 | Pestivirus | 11095 | Viruses | Viruses | 486 | 6.8699999999999985e-133 | NTclustered | gi|77799875|dbj|AB111961.2| | 233883 | g71535 | i0 | 94.322 | 99.9495268138801 | 317 | 18 | 100 | 0 | 1 | 317 | 1315 | 1631 | Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds, strain: 799ncp | blastn | 31684 | 486 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 7108009 | 7108009 | PRJNA753151_S_NODE_103306_length_279_cov_2.478814_g101016_i0 | PRJNA753151 | 103306 | 279 | 2.478814 | 6.91589106 | Allexivirus deltallii | 3433711 | Viruses | Viruses | 516 | 7.58e-142 | NTclustered | gi|1722561261|gb|MN059359.1| | 12430 | g101016 | i0 | 100 | 92.9175627240143 | 279 | 0 | 100 | 0 | 1 | 279 | 8134 | 8412 | Garlic virus D isolate G34-2, complete genome | blastn | 25924 | 516 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Alphaflexiviridae | Allexivirus | Allexivirus deltallii | ||
| 7108061 | 7108061 | PRJNA753151_S_NODE_11426_length_622_cov_6.761658_g9725_i0 | PRJNA753151 | 11426 | 622 | 6.761658 | 42.05751276 | Pestivirus bovis | 3052619 | Viruses | Viruses | 1005 | 0 | NTclustered | gi|1523731873|gb|MH490943.1| | 981676 | g9725 | i0 | 95.833 | 99.8778135048232 | 624 | 23 | 100 | 3 | 1 | 622 | 10344 | 9722 | Bovine viral diarrhea virus 1b strain BVDV BJ-2016, complete genome | blastn | 62124 | 1005 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 7108145 | 7108145 | PRJNA753151_S_NODE_133546_length_250_cov_2.922705_g131256_i0 | PRJNA753151 | 133546 | 250 | 2.922705 | 7.3067625 | Pestivirus bovis | 3052619 | Viruses | Viruses | 390 | 4.22e-104 | NTclustered | gi|2157110633|dbj|LC630446.1| | 11099 | g131256 | i0 | 94.8 | 99.912 | 250 | 13 | 100 | 0 | 1 | 250 | 565 | 814 | Bovine viral diarrhea virus 1 BVDV/Ibaraki/32/15 gene for structural glycoprotein E2, partial cds | blastn | 24978 | 390 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 7108193 | 7108193 | PRJNA753151_S_NODE_142166_length_243_cov_2.565000_g139876_i0 | PRJNA753151 | 142166 | 243 | 2.565 | 6.23295 | Pestivirus bovis | 3052619 | Viruses | Viruses | 416 | 6.739999999999998e-112 | NTclustered | gi|2496580377|gb|OP548503.1| | 11099 | g139876 | i0 | 97.531 | 99.0205761316872 | 243 | 6 | 100 | 0 | 1 | 243 | 2082 | 1840 | Bovine viral diarrhea virus 1 isolate USMARC_PI20734 polyprotein gene, complete cds | blastn | 24062 | 416 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 8383229 | 8383229 | PRJNA753151_S_NODE_213147_length_197_cov_2.045455_g210857_i0 | PRJNA753151 | 213147 | 197 | 2.045455 | 4.02954635 | Pestivirus bovis | 3052619 | Viruses | Viruses | 302 | 1.53e-77 | NTclustered | gi|386285713|gb|JQ418634.1| | 11099 | g210857 | i0 | 94.388 | 97.3756345177665 | 196 | 11 | 99 | 0 | 1 | 196 | 2255 | 2060 | Bovine viral diarrhea virus 1 isolate 08GB45-2 polyprotein gene, complete cds | blastn | 19183 | 302 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 8384023 | 8384023 | PRJNA753151_S_NODE_5267_length_835_cov_11.311869_g4277_i0 | PRJNA753151 | 5267 | 835 | 11.311869 | 94.45410615 | Pestivirus bovis | 3052619 | Viruses | Viruses | 1410 | 0 | NTclustered | gi|1523731873|gb|MH490943.1| | 981676 | g4277 | i0 | 97.126 | 97.8682634730539 | 835 | 24 | 100 | 0 | 1 | 835 | 892 | 58 | Bovine viral diarrhea virus 1b strain BVDV BJ-2016, complete genome | blastn | 81720 | 1410 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 8854957 | 8854957 | PRJNA753151_S_NODE_8787_length_686_cov_9.211509_g6469_i1 | PRJNA753151 | 8787 | 686 | 9.211509 | 63.19095174 | Pestivirus | 11095 | Viruses | Viruses | 1051 | 0 | NTclustered | gi|386285713|gb|JQ418634.1| | 11099 | g6469 | i1 | 94.315 | 99.7084548104956 | 686 | 39 | 100 | 0 | 1 | 686 | 4353 | 3668 | Bovine viral diarrhea virus 1 isolate 08GB45-2 polyprotein gene, complete cds | blastn | 68400 | 1051 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 9658832 | 9658832 | PRJNA753151_S_NODE_275628_length_169_cov_1.269841_g273338_i0 | PRJNA753151 | 275628 | 169 | 1.269841 | 2.14603129 | Pestivirus bovis | 3052619 | Viruses | Viruses | 278 | 2.14e-70 | NTclustered | gi|2553477538|gb|OR004812.1| | 11099 | g273338 | i0 | 96.429 | 99.6094674556213 | 168 | 6 | 99 | 0 | 2 | 169 | 9679 | 9512 | Bovine viral diarrhea virus 1 isolate TJ2108, complete genome | blastn | 16834 | 278 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 9659315 | 9659315 | PRJNA753151_S_NODE_73908_length_317_cov_2.864964_g71618_i0 | PRJNA753151 | 73908 | 317 | 2.864964 | 9.08193588 | Pestivirus bovis | 3052619 | Viruses | Viruses | 547 | 3.11e-151 | NTclustered | gi|1129880593|gb|KX170664.1| | 11099 | g71618 | i0 | 97.792 | 99.602523659306 | 317 | 7 | 100 | 0 | 1 | 317 | 1523 | 1839 | Bovine viral diarrhea virus 1 isolate V087 NS5B gene, partial cds | blastn | 31574 | 547 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 10934729 | 10934729 | PRJNA753151_S_NODE_49209_length_365_cov_2.667702_g46927_i0 | PRJNA753151 | 49209 | 365 | 2.667702 | 9.7371123 | Pestivirus bovis | 3052619 | Viruses | Viruses | 619 | 7.569999999999999e-173 | NTclustered | gi|2419860346|dbj|LC727644.1| | 11099 | g46927 | i0 | 97.26 | 99.9835616438356 | 365 | 10 | 100 | 0 | 1 | 365 | 8244 | 7880 | Bovine viral diarrhea virus 1 Tokachi-8 RNA, nearly complete genome | blastn | 36494 | 619 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 10934844 | 10934844 | PRJNA753151_S_NODE_76109_length_313_cov_25.148148_g73819_i0 | PRJNA753151 | 76109 | 313 | 25.148148 | 78.71370324 | Pestivirus bovis | 3052619 | Viruses | Viruses | 529 | 1.1099999999999996e-145 | NTclustered | gi|2858850729|gb|PQ613798.1| | 11099 | g73819 | i0 | 97.125 | 99.7539936102236 | 313 | 9 | 100 | 0 | 1 | 313 | 846 | 534 | Bovine viral diarrhea virus 1 isolate USMARC/PI-92-21/Serum polyprotein gene, complete cds | blastn | 31223 | 529 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13955812 | 13955812 | PRJNA753151_S_NODE_143111_length_242_cov_3.763819_g140821_i0 | PRJNA753151 | 143111 | 242 | 3.763819 | 9.10844198 | Pestivirus | 11095 | Viruses | Viruses | 409 | 1.12e-109 | NTclustered | gi|800924316|gb|KP941583.1| | 11099 | g140821 | i0 | 97.107 | 100 | 242 | 7 | 100 | 0 | 1 | 242 | 8159 | 7918 | Bovine viral diarrhea virus 1 strain USMARC-53874 polyprotein gene, complete cds | blastn | 24200 | 409 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 14758510 | 14758510 | PRJNA753151_S_NODE_158752_length_230_cov_7.320856_g156462_i0 | PRJNA753151 | 158752 | 230 | 7.320856 | 16.8379688 | Pestivirus bovis | 3052619 | Viruses | Viruses | 353 | 5.029999999999999e-93 | NTclustered | gi|987826|emb|Z54177.1| | 11099 | g156462 | i0 | 94.348 | 96.195652173913 | 230 | 13 | 100 | 0 | 1 | 230 | 232 | 3 | Bovine viral diarrhea virus (Indiana) gp53 gene | blastn | 22125 | 353 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 15230381 | 15230381 | PRJNA753151_S_NODE_144852_length_241_cov_2.272727_g142562_i0 | PRJNA753151 | 144852 | 241 | 2.272727 | 5.47727207 | Pestivirus | 11095 | Viruses | Viruses | 355 | 1.48e-93 | NTclustered | gi|1129879573|gb|KX170154.1| | 11099 | g142562 | i0 | 93.697 | 98.4149377593361 | 238 | 14 | 99 | 1 | 4 | 241 | 425 | 189 | Bovine viral diarrhea virus 1 isolate V078 E2 gene, partial cds | blastn | 23718 | 355 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 15230409 | 15230409 | PRJNA753151_S_NODE_186612_length_212_cov_2.467456_g184322_i0 | PRJNA753151 | 186612 | 212 | 2.467456 | 5.23100672 | Pestivirus | 11095 | Viruses | Viruses | 342 | 9.879999999999999e-90 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g184322 | i0 | 96.172 | 99.1603773584906 | 209 | 8 | 99 | 0 | 4 | 212 | 8501 | 8293 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 21022 | 342 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17308014 | 17308014 | PRJNA753151_S_NODE_214114_length_196_cov_8.424837_g211824_i0 | PRJNA753151 | 214114 | 196 | 8.424837 | 16.51268052 | Pestivirus bovis | 3052619 | Viruses | Viruses | 329 | 6.99e-86 | NTclustered | gi|2553477532|gb|OR004809.1| | 11099 | g211824 | i0 | 96.939 | 100.719387755102 | 196 | 6 | 100 | 0 | 1 | 196 | 1043 | 848 | Bovine viral diarrhea virus 1 isolate TJ2105, complete genome | blastn | 19741 | 329 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17308924 | 17308924 | PRJNA753151_S_NODE_71974_length_320_cov_2.274368_g69684_i0 | PRJNA753151 | 71974 | 320 | 2.274368 | 7.2779776 | Pestivirus bovis | 3052619 | Viruses | Viruses | 503 | 6.89e-138 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g69684 | i0 | 95 | 99.903125 | 320 | 16 | 100 | 0 | 1 | 320 | 9089 | 8770 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 31969 | 503 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17779562 | 17779562 | PRJNA753151_S_NODE_132174_length_251_cov_3.725962_g129884_i0 | PRJNA753151 | 132174 | 251 | 3.725962 | 9.35216462 | Pestivirus | 11095 | Viruses | Viruses | 399 | 7.049999999999999e-107 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g129884 | i0 | 95.582 | 99.1593625498008 | 249 | 11 | 99 | 0 | 1 | 249 | 8705 | 8953 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 24889 | 399 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18581357 | 18581357 | PRJNA753151_S_NODE_139975_length_245_cov_1.930693_g137685_i0 | PRJNA753151 | 139975 | 245 | 1.930693 | 4.73019785 | Pestivirus bovis | 3052619 | Viruses | Viruses | 390 | 4.129999999999999e-104 | NTclustered | gi|2419860348|dbj|LC727645.1| | 11099 | g137685 | i0 | 95.51 | 91.2897959183673 | 245 | 10 | 100 | 1 | 1 | 245 | 12071 | 11828 | Bovine viral diarrhea virus 1 Tokachi-13 RNA, nearly complete genome | blastn | 22366 | 390 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19053696 | 19053696 | PRJNA753151_S_NODE_7815_length_716_cov_4.335810_g6469_i0 | PRJNA753151 | 7815 | 716 | 4.33581 | 31.0443996 | Pestivirus | 11095 | Viruses | Viruses | 1140 | 0 | NTclustered | gi|6465859|emb|AJ238812.1| | 11099 | g6469 | i0 | 95.391 | 99.9413407821229 | 716 | 33 | 100 | 0 | 1 | 716 | 1582 | 2297 | pestivirus type 1 genomic RNA for E2, p7 genes and partial N2 gene, strain IDA | blastn | 71558 | 1140 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20328333 | 20328333 | PRJNA753151_S_NODE_203996_length_202_cov_1.880503_g201706_i0 | PRJNA753151 | 203996 | 202 | 1.880503 | 3.79861606 | Pestivirus | 11095 | Viruses | Viruses | 307 | 3.4e-79 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g201706 | i0 | 94.059 | 99.7970297029703 | 202 | 12 | 100 | 0 | 1 | 202 | 1347 | 1146 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 20159 | 307 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 21132166 | 21132166 | PRJNA753151_S_NODE_152077_length_235_cov_5.625000_g149787_i0 | PRJNA753151 | 152077 | 235 | 5.625 | 13.21875 | Pestivirus bovis | 3052619 | Viruses | Viruses | 374 | 3.9599999999999985e-99 | NTclustered | gi|1540352923|gb|MH231153.1| | 11099 | g149787 | i0 | 95.319 | 99.9063829787234 | 235 | 11 | 100 | 0 | 1 | 235 | 1550 | 1784 | Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds | blastn | 23478 | 374 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 22406761 | 22406761 | PRJNA753151_S_NODE_104398_length_278_cov_1.800000_g102108_i0 | PRJNA753151 | 104398 | 278 | 1.8 | 5.004 | Pestivirus bovis | 3052619 | Viruses | Viruses | 486 | 5.919999999999998e-133 | NTclustered | gi|806983108|gb|KP755839.1| | 11099 | g102108 | i0 | 98.201 | 99.9892086330935 | 278 | 5 | 100 | 0 | 1 | 278 | 825 | 548 | Bovine viral diarrhea virus 1 isolate PI6_MLN_3 nonstructural protein NS5b gene, partial cds | blastn | 27797 | 486 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 22879438 | 22879438 | PRJNA753151_S_NODE_16158_length_546_cov_6.200795_g14184_i0 | PRJNA753151 | 16158 | 546 | 6.200795 | 33.8563407 | Pestivirus | 11095 | Viruses | Viruses | 525 | 2.629999999999999e-144 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g14184 | i0 | 96.825 | 61.8626373626374 | 315 | 9 | 94 | 1 | 32 | 346 | 10714 | 10401 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 33777 | 525 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 22879444 | 22879444 | PRJNA753151_S_NODE_178558_length_217_cov_2.844828_g176268_i0 | PRJNA753151 | 178558 | 217 | 2.844828 | 6.17327676 | Pestivirus | 11095 | Viruses | Viruses | 351 | 1.69e-92 | NTclustered | gi|1129880363|gb|KX170549.1| | 11099 | g176268 | i0 | 95.853 | 99.7511520737327 | 217 | 9 | 100 | 0 | 1 | 217 | 570 | 354 | Bovine viral diarrhea virus 1 isolate V070 NS4B gene, partial cds | blastn | 21646 | 351 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 23683287 | 23683287 | PRJNA753151_S_NODE_282359_length_166_cov_2.040650_g280069_i0 | PRJNA753151 | 282359 | 166 | 2.04065 | 3.387479 | Pestivirus bovis | 3052619 | Viruses | Viruses | 291 | 2.7099999999999998e-74 | NTclustered | gi|530291193|gb|KC963967.1| | 11099 | g280069 | i0 | 98.193 | 100 | 166 | 3 | 100 | 0 | 1 | 166 | 11258 | 11093 | Bovine viral diarrhea virus 1 isolate 12F004, complete genome | blastn | 16600 | 291 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 24153594 | 24153594 | PRJNA753151_S_NODE_64799_length_332_cov_3.214533_g62509_i0 | PRJNA753151 | 64799 | 332 | 3.214533 | 10.67224956 | Pestivirus | 11095 | Viruses | Viruses | 542 | 1.52e-149 | NTclustered | gi|386285713|gb|JQ418634.1| | 11099 | g62509 | i0 | 96.084 | 99.9789156626506 | 332 | 13 | 100 | 0 | 1 | 332 | 2923 | 3254 | Bovine viral diarrhea virus 1 isolate 08GB45-2 polyprotein gene, complete cds | blastn | 33193 | 547 | 0.990859232175503 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 24956631 | 24956631 | PRJNA753151_S_NODE_241760_length_183_cov_1.314286_g239470_i0 | PRJNA753151 | 241760 | 183 | 1.314286 | 2.40514338 | Allexivirus alphallii | 3433708 | Viruses | Viruses | 246 | 6.659999999999999e-61 | NTclustered | gi|1896098363|gb|MT731490.1| | 12433 | g239470 | i0 | 100 | 75.0054644808743 | 133 | 0 | 100 | 0 | 51 | 183 | 8519 | 8651 | Garlic virus A isolate Yamuna Safed-3/G282/leaf, partial genome | blastn | 13726 | 246 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Alphaflexiviridae | Allexivirus | Allexivirus alphallii | ||
| 25428511 | 25428511 | PRJNA753151_S_NODE_22000_length_486_cov_6.194131_g19873_i0 | PRJNA753151 | 22000 | 486 | 6.194131 | 30.10347666 | Pestivirus | 11095 | Viruses | Viruses | 749 | 0 | NTclustered | gi|2496580377|gb|OP548503.1| | 11099 | g19873 | i0 | 94.444 | 99.8086419753086 | 486 | 27 | 100 | 0 | 1 | 486 | 10209 | 9724 | Bovine viral diarrhea virus 1 isolate USMARC_PI20734 polyprotein gene, complete cds | blastn | 48507 | 754 | 0.993368700265252 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 25428542 | 25428542 | PRJNA753151_S_NODE_282720_length_166_cov_1.829268_g280430_i0 | PRJNA753151 | 282720 | 166 | 1.829268 | 3.03658488 | Pestivirus | 11095 | Viruses | Viruses | 241 | 2.76e-59 | NTclustered | gi|6465859|emb|AJ238812.1| | 11099 | g280430 | i0 | 92.771 | 99.6807228915663 | 166 | 12 | 100 | 0 | 1 | 166 | 232 | 67 | pestivirus type 1 genomic RNA for E2, p7 genes and partial N2 gene, strain IDA | blastn | 16547 | 241 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;