RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA753151", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA753151 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28547315 28547315 PRJNA753151_S_NODE_203747_length_202_cov_2.264151_g201457_i0 PRJNA753151 203747 202 2.264151 4.57358502 Opisthokonta 33154 Nematoda Nematoda 82.8 5.36e-18   NR KHJ46846.1 68888 g201457 i0 70 7.2029702970297 60 18 89.1 0 202 23 76 135 KHJ46846.1 Ribosomal protein S27a [Trichuris suis] diamond 1455 83.2 0.995192307692308 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
28568731 28568731 PRJNA753151_S_NODE_125487_length_257_cov_2.728972_g123197_i0 PRJNA753151 125487 257 2.728972 7.01345804 Trichinella nativa 6335 Nematoda Nematoda 64.3 1e-11   NR KRZ47273.1 6335 g123197 i0 100 0.385214007782101 33 0 38.5 0 187 89 11 43 KRZ47273.1 hypothetical protein T02_1459 [Trichinella nativa] diamond 99 64.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
29263232 29263232 PRJNA753151_S_NODE_245489_length_181_cov_1.956522_g243199_i0 PRJNA753151 245489 181 1.956522 3.54130482 Wuchereria bancrofti 6293 Nematoda Nematoda 46.6 1.61e-4   NR EJW75886.1 6293 g243199 i0 43.1 0.845303867403315 51 28 82.9 1 15 164 58 108 EJW75886.1 hypothetical protein WUBG_13206, partial [Wuchereria bancrofti] diamond 153 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;