RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA753112", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA753112 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28063532 28063532 PRJNA753112_P_NODE_27825_length_257_cov_2.353261_g27483_i0 PRJNA753112 27825 257 2.353261 6.04788077 Luteolibacter sp. SL25 1962973 Bacteria Bacteria 47 0.00125   NR WP_267672914.1 2995170 g27483 i0 45.3 1.21400778210117 53 28 61.9 1 98 256 35 86 WP_267672914.1 FAD:protein FMN transferase [Luteolibacter sp. SL250] diamond 312 47 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
31348596 31348596 PRJNA753112_P_NODE_8936_length_455_cov_1.583770_g8594_i0 PRJNA753112 8936 455 1.58377 7.2061535 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 53.1 7.26e-5   NR MDF1852461.1 2026801 g8594 i0 48.1 0.342857142857143 52 25 34.3 1 19 174 1 50 MDF1852461.1 adenylate/guanylate cyclase domain-containing protein [Verrucomicrobiales bacterium] diamond 156 53.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;