RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA753112", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA753112 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24955393 24955393 PRJNA753112_P_NODE_16320_length_336_cov_1.186312_g15978_i0 PRJNA753112 16320 336 1.186312 3.98600832 Hoplolaimus columbus 312701 Nematoda Nematoda 56.5 0.002   NTclustered gi|685217955|gb|KJ934150.1| 312701 g15978 i0 100 4.38392857142857 30 0 9 0 1 30 111 82 Hoplolaimus columbus isolate 12 22307 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1473 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hoplolaimidae Hoplolaimus Hoplolaimus columbus
27937409 27937409 PRJNA753112_P_NODE_15645_length_343_cov_2.185185_g15303_i0 PRJNA753112 15645 343 2.185185 7.49518455 Pristionchus fissidentatus 1538716 Nematoda Nematoda 128 6.83e-36   NR GMT14341.1 1538716 g15303 i0 65.6 1.61807580174927 93 31 81.3 1 320 42 7 98 GMT14341.1 hypothetical protein PFISCL1PPCAC_5638, partial [Pristionchus fissidentatus] diamond 555 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
32896886 32896886 PRJNA753112_P_NODE_9660_length_437_cov_1.618132_g9318_i0 PRJNA753112 9660 437 1.618132 7.07123684 Trichuris suis 68888 Nematoda Nematoda 90.5 1.58e-18   NR KFD51108.1 68888 g9318 i0 39 0.967963386727689 141 82 94.1 1 5 415 174 314 KFD51108.1 hypothetical protein M513_08008 [Trichuris suis] diamond 423 90.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;