RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA753112", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA753112 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27432381 27432381 PRJNA753112_P_NODE_33123_length_243_cov_0.917647_g32781_i0 PRJNA753112 33123 243 0.917647 2.22988221 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 57 3.52e-7   NR HKP29773.1 2448054 g32781 i0 67.4 1.14814814814815 46 12 53.1 1 4 132 447 492 HKP29773.1 DNA mismatch repair protein MutS [Gemmatimonadales bacterium] diamond 279 57 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28284420 28284420 PRJNA753112_P_NODE_31286_length_247_cov_0.896552_g30944_i0 PRJNA753112 31286 247 0.896552 2.21448344 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 92.4 1.25e-19   NR HUF27631.1 2026741 g30944 i0 60 4.87044534412955 80 32 97.2 0 242 3 586 665 HUF27631.1 MASE1 domain-containing protein [Gemmatimonadaceae bacterium] diamond 1203 92.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32455935 32455935 PRJNA753112_P_NODE_35859_length_203_cov_5.807692_g35517_i0 PRJNA753112 35859 203 5.807692 11.78961476 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 40.4 0.0425   NR MBX6365079.1 2026742 g35517 i0 70.8 0.354679802955665 24 7 35.5 0 203 132 65 88 MBX6365079.1 type I-E CRISPR-associated endoribonuclease Cas2 [Gemmatimonadota bacterium] diamond 72 40.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;