RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA752572", tax_phylum = "Minisyncoccota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Minisyncoccota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA752572 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27621683 27621683 PRJNA752572_P_NODE_186424_length_195_cov_2.018750_g185917_i0 PRJNA752572 186424 195 2.01875 3.9365625 Minisyncoccota bacterium 2053589 Bacteria Bacteria 43.5 0.00613   NR MDR3548414.1 2053589 g185917 i0 32.7 0.846153846153846 55 37 84.6 0 166 2 50 104 MDR3548414.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 165 43.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28947916 28947916 PRJNA752572_P_NODE_268028_length_164_cov_1.240310_g267521_i0 PRJNA752572 268028 164 1.24031 2.0341084 Minisyncoccota bacterium 2053589 Bacteria Bacteria 43.9 0.00497   NR MDR3549369.1 2053589 g267521 i0 43.4 1.48170731707317 53 23 89.6 3 17 163 170 219 MDR3549369.1 phospholipid scramblase-related protein [Candidatus Paceibacterota bacterium] diamond 243 43.9 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31000837 31000837 PRJNA752572_P_NODE_200994_length_188_cov_1.045752_g200487_i0 PRJNA752572 200994 188 1.045752 1.96601376 Minisyncoccota bacterium 2053589 Bacteria Bacteria 52.8 4.24e-6   NR MDR3548581.1 2053589 g200487 i0 50.9 0.845744680851064 53 24 84.6 1 186 28 110 160 MDR3548581.1 methyltransferase domain-containing protein [Candidatus Paceibacterota bacterium] diamond 159 52.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32234504 32234504 PRJNA752572_P_NODE_81898_length_300_cov_2.147170_g81391_i0 PRJNA752572 81898 300 2.14717 6.44151 Minisyncoccota bacterium 2053589 Bacteria Bacteria 121 2.59e-33   NR MDR3549538.1 2053589 g81391 i0 64 0.86 86 31 86 0 42 299 8 93 MDR3549538.1 small nuclear ribonucleoprotein Sm D2 [Candidatus Paceibacterota bacterium] diamond 258 121 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;