RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA752572" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA752572 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3753074 3753074 PRJNA752572_P_NODE_261923_length_165_cov_3.430769_g261416_i0 PRJNA752572 261923 165 3.430769 5.66076885 Fusobacterium 848 Bacteria Bacteria 305 9.59e-79   NTclustered gi|2705020071|gb|CP084132.1| 851 g261416 i0 100 485.157575757576 165 0 100 0 1 165 107302 107466 Fusobacterium nucleatum strain KCOM3713 chromosome, complete genome blastn 80051 305 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
7579303 7579303 PRJNA752572_P_NODE_166246_length_207_cov_2.005814_g165739_i0 PRJNA752572 166246 207 2.005814 4.15203498 Fusobacterium 848 Bacteria Bacteria 383 5.65e-102   NTclustered gi|2446175567|gb|CP117964.1| 851 g165739 i0 100 235.671497584541 207 0 100 0 1 207 1537341 1537547 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 48784 383 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
8854388 8854388 PRJNA752572_P_NODE_197387_length_189_cov_2.818182_g196880_i0 PRJNA752572 197387 189 2.818182 5.32636398 Fusobacterium 848 Bacteria Bacteria 340 3.09e-89   NTclustered gi|2704983719|gb|CP077132.1| 851 g196880 i0 100 485.783068783069 184 0 97 0 1 184 93884 93701 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 91813 340 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
8854408 8854408 PRJNA752572_P_NODE_98707_length_272_cov_1.789030_g98200_i0 PRJNA752572 98707 272 1.78903 4.8661616 Fusobacterium 848 Bacteria Bacteria 503 5.729999999999998e-138   NTclustered gi|2445153921|gb|CP117797.1| 851 g98200 i0 100 435.875 272 0 100 0 1 272 2297328 2297599 Fusobacterium nucleatum strain FNA chromosome, complete genome blastn 118558 503 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
19855665 19855665 PRJNA752572_P_NODE_176996_length_200_cov_3.745455_g176489_i0 PRJNA752572 176996 200 3.745455 7.49091 Fusobacterium nucleatum 851 Bacteria Bacteria 320 4.31e-83   NTclustered gi|2704944210|gb|CP077182.1| 851 g176489 i0 95.5 491 200 9 100 0 1 200 2067101 2067300 Fusobacterium nucleatum strain SB032 chromosome, complete genome blastn 98200 320 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
31221700 31221700 PRJNA752572_P_NODE_70675_length_324_cov_1.290657_g70168_i0 PRJNA752572 70675 324 1.290657 4.18172868 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 46.2 0.0055   NR WP_294096266.1 527638 g70168 i0 39.1 0.851851851851852 92 46 83.3 3 39 308 383 466 WP_294096266.1 Na/Pi cotransporter family protein [uncultured Cetobacterium sp.] diamond 276 46.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;