RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA752572", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA752572 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12681019 12681019 PRJNA752572_P_NODE_82130_length_299_cov_9.659091_g81623_i0 PRJNA752572 82130 299 9.659091 28.88068209 Capsulimonas 2494209 Bacteria Bacteria 265 3.28e-66   NTclustered gi|2874254000|emb|OY970325.1| 157466 g81623 i0 84.364 203.277591973244 275 38 91 5 1 271 1304487 1304760 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 60780 265 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
19053101 19053101 PRJNA752572_P_NODE_19715_length_607_cov_3.241259_g19275_i0 PRJNA752572 19715 607 3.241259 19.67444213 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 161 2.71e-46   NR MEJ5169988.1 2682145 g19275 i0 48.8 6.1828665568369 172 61 84.5 3 9 521 34 179 MEJ5169988.1 glutathione peroxidase [Fimbriimonadales bacterium] diamond 3753 161 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
29200423 29200423 PRJNA752572_P_NODE_241649_length_171_cov_1.176471_g241142_i0 PRJNA752572 241649 171 1.176471 2.01176541 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 53.9 1.54e-6   NR MFQ3609891.1 2682145 g241142 i0 60 1.2280701754386 35 14 61.4 0 169 65 309 343 MFQ3609891.1 3-phosphoserine/phosphohydroxythreonine transaminase [Fimbriimonadales bacterium] diamond 210 53.9 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;