RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA752572", tax_clade = "Stenosarchaea group" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

  • Stenosarchaea group · 4 ✖

bioproject 1

  • PRJNA752572 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9657157 9657157 PRJNA752572_P_NODE_9188_length_844_cov_3.318912_g8868_i0 PRJNA752572 9188 844 3.318912 28.01161728 Methanosarcinales archaeon 2250255 Archaea Archaea 338 9.959999999999999e-112   NR RYE83110.1 2250255 g8868 i0 62 0.945497630331754 266 92 94.5 3 844 47 160 416 RYE83110.1 MAG: translation elongation factor EF-1 subunit alpha, partial [Methanosarcinales archaeon] diamond 798 338 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
27663159 27663159 PRJNA752572_P_NODE_283044_length_155_cov_4.058333_g282537_i0 PRJNA752572 283044 155 4.058333 6.29041615 root 1 Root_unresolved Root_unresolved 62.4 1.29e-9   NR WP_013194585.1 2322 g282537 i0 63.6 4.12258064516129 44 16 85.2 0 132 1 2 45 WP_013194585.1 cryptochrome/photolyase family protein [Methanohalobium evestigatum] diamond 639 62.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalobium Methanohalobium evestigatum
28789625 28789625 PRJNA752572_P_NODE_212187_length_182_cov_1.959184_g211680_i0 PRJNA752572 212187 182 1.959184 3.56571488 Methanoregulaceae archaeon 2485498 Archaea Archaea 47.4 3.85e-4   NR HNJ81026.1 2485498 g211680 i0 41.5 0.873626373626374 53 29 87.4 1 159 1 603 653 HNJ81026.1 Ig-like domain-containing protein [Methanoregulaceae archaeon] diamond 159 47.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
29074141 29074141 PRJNA752572_P_NODE_207988_length_184_cov_1.973154_g207481_i0 PRJNA752572 207988 184 1.973154 3.63060336 Candidatus Methanoperedens sp. 2032688 Archaea Archaea 55.1 6.94e-7   NR HEY9245765.1 2032688 g207481 i0 76.5 2.23369565217391 34 8 55.4 0 105 4 2 35 HEY9245765.1 serine hydroxymethyltransferase [Candidatus Methanoperedens sp.] diamond 411 55.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;