RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA752572", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 8 ✖

tax_clade 1

  • Metamonada · 8 ✖

bioproject 1

  • PRJNA752572 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28389138 28389138 PRJNA752572_P_NODE_133186_length_232_cov_2.253807_g132679_i0 PRJNA752572 133186 232 2.253807 5.22883224 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.3 2.65e-6   NR XP_001329922.1 412133 g132679 i0 33.8 1.99137931034483 77 51 99.6 0 2 232 135 211 XP_001329922.1 mRNA binding [Trichomonas vaginalis G3] diamond 462 54.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28505605 28505605 PRJNA752572_P_NODE_233647_length_173_cov_1.478261_g233140_i0 PRJNA752572 233647 173 1.478261 2.55739153 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 83.6 5.88e-17   NR XP_068362600.1 1144522 g233140 i0 62.3 4.68208092485549 53 20 91.9 0 160 2 163 215 XP_068362600.1 AGC family protein kinase [Tritrichomonas foetus] diamond 810 83.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28979378 28979378 PRJNA752572_P_NODE_113988_length_252_cov_2.092166_g113481_i0 PRJNA752572 113988 252 2.092166 5.27225832 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 48.1 5.19e-4   NR XP_068361143.1 1144522 g113481 i0 32.9 1.83333333333333 70 47 83.3 0 223 14 680 749 XP_068361143.1 uncharacterized protein TRFO_23625 [Tritrichomonas foetus] diamond 462 48.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30052723 30052723 PRJNA752572_P_NODE_176871_length_201_cov_0.939759_g176364_i0 PRJNA752572 176871 201 0.939759 1.88891559 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 73.9 8.57e-14   NR XP_068361206.1 1144522 g176364 i0 51.6 2.92537313432836 64 31 95.5 0 7 198 76 139 XP_068361206.1 Ubiquitin-conjugating enzyme E2 6 [Tritrichomonas foetus] diamond 588 73.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30400887 30400887 PRJNA752572_P_NODE_22253_length_574_cov_30.745826_g21802_i0 PRJNA752572 22253 574 30.745826 176.48104124 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 199 1.18e-61   NR XP_068360038.1 1144522 g21802 i0 57.2 6.42334494773519 173 74 90.4 0 25 543 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 3687 199 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30558188 30558188 PRJNA752572_P_NODE_54593_length_370_cov_2.498507_g54086_i0 PRJNA752572 54593 370 2.498507 9.2444759 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 51.6 1.23e-4   NR XP_067775923.1 135588 g54086 i0 35 0.648648648648649 80 51 64.9 1 357 118 189 267 XP_067775923.1 myosin heavy chain, embryonic smooth muscle isoform [Histomonas meleagridis] diamond 240 51.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31000831 31000831 PRJNA752572_P_NODE_142374_length_224_cov_2.761905_g141867_i0 PRJNA752572 142374 224 2.761905 6.1866672 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 44.3 0.00836   NR XP_068356892.1 1144522 g141867 i0 36.7 0.65625 49 31 65.6 0 152 6 33 81 XP_068356892.1 Choline transporter-like protein 2 [Tritrichomonas foetus] diamond 147 44.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32812351 32812351 PRJNA752572_P_NODE_263760_length_165_cov_1.400000_g263253_i0 PRJNA752572 263760 165 1.4 2.31 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 94.4 6.779999999999999e-23   NR XP_001313641.1 412133 g263253 i0 69.1 8 55 17 100 0 1 165 36 90 XP_001313641.1 histone ubiquitination [Trichomonas vaginalis G3] diamond 1320 94.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;