RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA752572", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA752572 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28505603 28505603 PRJNA752572_P_NODE_223287_length_177_cov_2.042254_g222780_i0 PRJNA752572 223287 177 2.042254 3.61478958 Fidelibacterota bacterium 2026760 Bacteria Bacteria 47 5.06e-4   NR GIR56946.1 2026760 g222780 i0 38.9 3.54237288135593 54 33 91.5 0 4 165 96 149 GIR56946.1 MAG: hypothetical protein CM15mP64_3580 [Fidelibacterota bacterium] diamond 627 47 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
29673530 29673530 PRJNA752572_P_NODE_126810_length_238_cov_2.211823_g126303_i0 PRJNA752572 126810 238 2.211823 5.26413874 Fidelibacterota bacterium 2026760 Bacteria Bacteria 43.1 0.025   NR MEE9574315.1 2026760 g126303 i0 40 0.69327731092437 55 32 69.3 1 230 66 230 283 MEE9574315.1 hypothetical protein [Fidelibacterota bacterium] diamond 165 43.1 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;