RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA752572", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA752572 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17306739 17306739 PRJNA752572_P_NODE_52854_length_376_cov_2.190616_g52348_i0 PRJNA752572 52854 376 2.190616 8.23671616 Copromyxa protea 931554 Tubulinea other_Eukaryota 545 1.35e-150   NTclustered gi|508737347|dbj|AB766053.1| 931554 g52348 i0 93.029 32.8404255319149 373 26 99 0 4 376 82 454 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 12348 545 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
31231628 31231628 PRJNA752572_P_NODE_94155_length_279_cov_1.557377_g93648_i0 PRJNA752572 94155 279 1.557377 4.34508183 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 1.81e-26   NR ABD46563.1 5778 g93648 i0 50 7 92 46 98.9 0 1 276 83 174 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 1953 107 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31886075 31886075 PRJNA752572_P_NODE_112557_length_254_cov_1.616438_g112050_i0 PRJNA752572 112557 254 1.616438 4.10575252 Amoeba proteus 5775 Tubulinea other_Eukaryota 116 1.33e-28   NR AAD37351.1 5775 g112050 i0 69.4 1.99606299212598 85 24 98 1 250 2 103 187 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 507 116 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;