RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA752572", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA752572 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2476732 2476732 PRJNA752572_P_NODE_237222_length_172_cov_1.525547_g236715_i0 PRJNA752572 237222 172 1.525547 2.62394084 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 77.8 2.91e-16   NR XP_004368153.1 1257118 g236715 i0 68.4 4.97093023255814 57 17 99.4 1 172 2 5 60 XP_004368153.1 ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] diamond 855 77.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18580440 18580440 PRJNA752572_P_NODE_78375_length_307_cov_1.966912_g77868_i0 PRJNA752572 78375 307 1.966912 6.03841984 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 136 2.43e-35   NR XP_004337574.1 1257118 g77868 i0 64.7 1.99348534201954 102 30 99.7 1 2 307 66 161 XP_004337574.1 3oxoacid CoA transferase 1 isoform 3, putative [Acanthamoeba castellanii str. Neff] diamond 612 136 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25428030 25428030 PRJNA752572_P_NODE_8020_length_891_cov_2.943925_g7722_i0 PRJNA752572 8020 891 2.943925 26.23037175 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 152 8.62e-32   NTclustered gi|300078499|gb|GU001161.1| 197531 g7722 i0 89.344 12.9708193041526 122 12 14 1 727 847 2295 2174 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11557 152 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
27653280 27653280 PRJNA752572_P_NODE_249524_length_169_cov_0.985075_g249017_i0 PRJNA752572 249524 169 0.985075 1.66477675 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 68.9 7.97e-12   NR XP_004354057.1 1257118 g249017 i0 60.7 4.93491124260355 56 22 99.4 0 1 168 379 434 XP_004354057.1 amidohydrolase domain containing protein [Acanthamoeba castellanii str. Neff] diamond 834 68.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;