RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA752278" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA752278 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27505312 27505312 PRJNA752278_P_NODE_76963_length_251_cov_2.101124_g76760_i0 PRJNA752278 76963 251 2.101124 5.27382124 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 84.3 8.42e-17   NR XP_068360062.1 1144522 g76760 i0 70.6 4.49402390438247 51 15 61 0 154 2 6 56 XP_068360062.1 UDP-glucose 6-dehydrogenase [Tritrichomonas foetus] diamond 1128 85.1 0.990599294947121 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28126792 28126792 PRJNA752278_P_NODE_96065_length_244_cov_1.286550_g95862_i0 PRJNA752278 96065 244 1.28655 3.139182 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 43.9 0.00262   NR XP_001579826.1 412133 g95862 i0 43.6 0.94672131147541 39 22 48 0 2 118 20 58 XP_001579826.1 ankyrin repeat protein family [Trichomonas vaginalis G3] diamond 231 43.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28262724 28262724 PRJNA752278_P_NODE_62486_length_265_cov_2.187500_g62283_i0 PRJNA752278 62486 265 2.1875 5.796875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 75.5 1.43e-14   NR XP_068360038.1 1144522 g62283 i0 50 6.10188679245283 78 39 88.3 0 262 29 101 178 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 1617 75.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30062594 30062594 PRJNA752278_P_NODE_53171_length_274_cov_1.532338_g52968_i0 PRJNA752278 53171 274 1.532338 4.19860612 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 84.3 8.93e-17   NR XP_067779823.1 135588 g52968 i0 59.7 4.17153284671533 62 25 67.9 0 2 187 155 216 XP_067779823.1 CK1 family protein kinase [Histomonas meleagridis] diamond 1143 85.1 0.990599294947121 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31411699 31411699 PRJNA752278_P_NODE_496_length_1423_cov_6.232593_g385_i0 PRJNA752278 496 1423 6.232593 88.689798390000007 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 77 5.8e-12   NR XP_001325113.1 412133 g385 i0 32.2 0.320449754040759 152 96 31.4 4 657 1103 6 153 XP_001325113.1 perineurial glial growth protein family [Trichomonas vaginalis G3] diamond 456 77 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32749402 32749402 PRJNA752278_P_NODE_33200_length_298_cov_2.368889_g32997_i0 PRJNA752278 33200 298 2.368889 7.05928922 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 146 1.78e-40   NR XP_067777545.1 135588 g32997 i0 64.6 5.00335570469799 99 35 99.7 0 298 2 215 313 XP_067777545.1 GDP-mannose 3,5-epimerase 2 [Histomonas meleagridis] diamond 1491 146 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;