RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA752278", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA752278 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7105773 7105773 PRJNA752278_P_NODE_20226_length_354_cov_1.096085_g20023_i0 PRJNA752278 20226 354 1.096085 3.8801409 Mesomycoplasma ovipneumoniae 29562 Bacteria Bacteria 52.8 0.033   NTclustered gi|2716992161|gb|CP145969.1| 29562 g20023 i0 100 0.0790960451977401 28 0 8 0 33 60 1015437 1015464 Mesomycoplasma ovipneumoniae strain CHIF6_MARM chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae
12680509 12680509 PRJNA752278_P_NODE_330_length_1595_cov_5.732589_g251_i0 PRJNA752278 330 1595 5.732589 91.43479455 root 1 Root_unresolved Root_unresolved 120 2.51e-28   NR MDI4567532.1 2108 g251 i0 50.4 4.44263322884013 125 61 23.5 1 443 69 18 141 MDI4567532.1 30S ribosomal protein S9 [Mycoplasma sp.] diamond 7086 120 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.
28600390 28600390 PRJNA752278_P_NODE_110447_length_226_cov_2.797386_g110244_i0 PRJNA752278 110447 226 2.797386 6.32209236 Mollicutes bacterium 37628 Bacteria Bacteria 158 2.1099999999999998e-47   NR MCI7332534.1 37628 g110244 i0 97.3 0.982300884955752 74 2 98.2 0 226 5 63 136 MCI7332534.1 DUF5662 family protein [Mollicutes bacterium] diamond 222 158 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium
29200403 29200403 PRJNA752278_P_NODE_91029_length_246_cov_0.890173_g90826_i0 PRJNA752278 91029 246 0.890173 2.18982558 Mycoplasma sp. HU2 2108 Bacteria Bacteria 156 3.04e-42   NR WP_050517574.1 1664275 g90826 i0 93.8 0.98780487804878 81 5 98.8 0 244 2 477 557 WP_050517574.1 MOLPALP family lipoprotein [Mycoplasma sp. HU2014] diamond 243 156 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. HU2014
30337597 30337597 PRJNA752278_P_NODE_105392_length_241_cov_0.916667_g105189_i0 PRJNA752278 105392 241 0.916667 2.20916747 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 147 4.569999999999999e-42   NR NLH45944.1 1898209 g105189 i0 92.4 0.983402489626556 79 6 98.3 0 239 3 26 104 NLH45944.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Acholeplasmataceae bacterium] diamond 237 147 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
31569985 31569985 PRJNA752278_P_NODE_103156_length_241_cov_2.386905_g102953_i0 PRJNA752278 103156 241 2.386905 5.75244105 Mollicutes bacterium 37628 Bacteria Bacteria 89.4 4.39e-21   NR MDD7037414.1 37628 g102953 i0 97.9 0.5850622406639 47 1 58.5 0 141 1 1 47 MDD7037414.1 hypothetical protein [Mollicutes bacterium] diamond 141 89.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;