RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where bioproject = "PRJNA752278" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 25 ✖

bioproject 1

  • PRJNA752278 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
727430 727430 PRJNA752278_P_NODE_41261_length_285_cov_3.089623_g41058_i0 PRJNA752278 41261 285 3.089623 8.80542555 Halococcus qingdaonensis 224402 Archaea Archaea 329 1.09e-85   NTclustered gi|2281256326|gb|CP101943.1| 224402 g41058 i0 87.633 9.88070175438597 283 35 99 0 3 285 2196015 2196297 Halococcus qingdaonensis strain CGMCC 1.4243 chromosome, complete genome blastn 2816 329 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus qingdaonensis
727815 727815 PRJNA752278_P_NODE_62041_length_266_cov_1.310881_g61838_i0 PRJNA752278 62041 266 1.310881 3.48694346 Halarchaeum sp. CBA1220 1853682 Archaea Archaea 128 3.93e-25   NTclustered gi|1864269003|gb|CP054707.1| 1853682 g61838 i0 89.899 1.04135338345865 99 10 37 0 166 264 760604 760702 Halarchaeum sp. CBA1220 chromosome, complete genome blastn 277 128 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halarchaeum Halarchaeum sp. CBA1220
1201296 1201296 PRJNA752278_P_NODE_8841_length_476_cov_1.486352_g8638_i0 PRJNA752278 8841 476 1.486352 7.07503552 Methanosarcinales archaeon 2250255 Archaea Archaea 233 2.8299999999999996e-72   NR RYE83110.1 2250255 g8638 i0 82.6 0.831932773109244 132 23 83.2 0 476 81 283 414 RYE83110.1 MAG: translation elongation factor EF-1 subunit alpha, partial [Methanosarcinales archaeon] diamond 396 233 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
5028915 5028915 PRJNA752278_P_NODE_15424_length_389_cov_1.541139_g15221_i0 PRJNA752278 15424 389 1.541139 5.99503071 root 1 Root_unresolved Root_unresolved 58.4 7.99e-4   NTclustered gi|1134979927|gb|CP019327.1| 588898 g15221 i0 100 5.59383033419023 31 0 8 0 105 135 906802 906772 Natronorubrum daqingense strain JX313, complete sequence blastn 2176 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense
8381578 8381578 PRJNA752278_P_NODE_85647_length_248_cov_0.880000_g85444_i0 PRJNA752278 85647 248 0.88 2.1824 Salinirubellus salinus 1364945 Archaea Archaea 237 5.77e-58   NTclustered gi|2297614754|gb|CP104003.1| 1364945 g85444 i0 85.778 36.3790322580645 225 30 90 2 25 248 560745 560522 Salinirubellus salinus strain ZS-35-S2 chromosome, complete genome blastn 9022 237 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Salinirubellus Salinirubellus salinus
9655239 9655239 PRJNA752278_P_NODE_105188_length_241_cov_0.916667_g104985_i0 PRJNA752278 105188 241 0.916667 2.20916747 Halorientalis litorea 2931977 Archaea Archaea 274 4.2499999999999997e-69   NTclustered gi|2225350816|gb|CP095482.1| 2931977 g104985 i0 87.395 99.4564315352697 238 30 99 0 1 238 1205195 1205432 Halorientalis litorea strain ZY14 chromosome, complete genome blastn 23969 274 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis litorea
9655983 9655983 PRJNA752278_P_NODE_42248_length_284_cov_2.824645_g42045_i0 PRJNA752278 42248 284 2.824645 8.0219918 Halobellus inordinatus 1126236 Archaea Archaea 54.7 0.007   NTclustered gi|2279714123|gb|CP101825.1| 1126236 g42045 i0 100 0.102112676056338 29 0 10 0 172 200 1001867 1001895 Halobellus inordinatus strain DSM 26177 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus inordinatus
11404827 11404827 PRJNA752278_P_NODE_52469_length_275_cov_1.287129_g52266_i0 PRJNA752278 52469 275 1.287129 3.53960475 Methanosarcina 2207 Archaea Archaea 503 5.809999999999998e-138   NTclustered gi|410699094|gb|JX560180.1| 2209 g52266 i0 99.636 115.185454545455 275 1 100 0 1 275 281 555 Methanosarcina mazei strain KOR-6 16S ribosomal RNA gene, partial sequence blastn 31676 503 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
12680164 12680164 PRJNA752278_P_NODE_102430_length_242_cov_0.911243_g102227_i0 PRJNA752278 102430 242 0.911243 2.20520806 Halobacterium wangiae 2902623 Archaea Archaea 68.9 8.85e-13   NR WP_232701369.1 2902623 g102227 i0 63.3 1.21487603305785 49 18 60.7 0 148 2 73 121 WP_232701369.1 winged helix-turn-helix transcriptional regulator [Halobacterium wangiae] diamond 294 68.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium wangiae
14757176 14757176 PRJNA752278_P_NODE_84712_length_248_cov_2.057143_g84509_i0 PRJNA752278 84712 248 2.057143 5.10171464 Halococcus dombrowskii 179637 Archaea Archaea 139 1.67e-28   NTclustered gi|2221489803|gb|CP095005.1| 179637 g84509 i0 78.138 20.7701612903226 247 34 99 11 2 248 1282840 1283066 Halococcus dombrowskii strain H4 chromosome, complete genome blastn 5151 139 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
15229408 15229408 PRJNA752278_P_NODE_36192_length_290_cov_2.944700_g35989_i0 PRJNA752278 36192 290 2.9447 8.53963 Halobacteriales 2235 Archaea Archaea 67.6 9.59e-7   NTclustered gi|1336549475|gb|CP026309.1| 755307 g35989 i0 97.436 1.62068965517241 39 1 13 0 246 284 2365683 2365721 Salinigranum rubrum strain GX10 chromosome, complete genome blastn 470 67.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinigranum Salinigranum rubrum
24954625 24954625 PRJNA752278_P_NODE_74740_length_253_cov_2.516667_g74537_i0 PRJNA752278 74740 253 2.516667 6.36716751 Halalkaliarchaeum sp. AArc-CO 2866381 Archaea Archaea 71.3 6.34e-8   NTclustered gi|2295229904|gb|CP087723.1| 2866381 g74537 i0 92 9.11462450592885 50 4 20 0 17 66 2814536 2814487 Halalkaliarchaeum sp. AArc-CO chromosome, complete genome blastn 2306 71.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halalkaliarchaeum Halalkaliarchaeum sp. AArc-CO
27779501 27779501 PRJNA752278_P_NODE_31684_length_304_cov_1.969697_g31481_i0 PRJNA752278 31684 304 1.969697 5.98787888 Methanocella sp. 2052833 Archaea Archaea 75.1 2.81e-13   NR HMK45155.1 2052833 g31481 i0 44.2 1.69736842105263 86 48 84.9 0 259 2 53 138 HMK45155.1 MFS transporter [Methanocella sp.] diamond 516 75.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales Methanocellaceae Methanocella Methanocella sp.
27905414 27905414 PRJNA752278_P_NODE_76805_length_251_cov_2.471910_g76602_i0 PRJNA752278 76805 251 2.47191 6.2044941 Methanosarcina sp. 2213 Archaea Archaea 88.2 9.18e-20   NR HET8688093.1 2213 g76602 i0 66.1 1.48207171314741 62 21 74.1 0 250 65 110 171 HET8688093.1 TnsA endonuclease N-terminal domain-containing protein [Methanosarcina sp.] diamond 372 88.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28158467 28158467 PRJNA752278_P_NODE_102665_length_242_cov_0.911243_g102462_i0 PRJNA752278 102665 242 0.911243 2.20520806 Methanocella conradii 1175444 Archaea Archaea 41.6 0.0481   NR WP_174590146.1 1175444 g102462 i0 32.5 1.02892561983471 83 47 91.7 2 5 226 37 119 WP_174590146.1 hypothetical protein [Methanocella conradii] diamond 249 41.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales Methanocellaceae Methanocella Methanocella conradii
28252916 28252916 PRJNA752278_P_NODE_44686_length_282_cov_1.712919_g44483_i0 PRJNA752278 44686 282 1.712919 4.83043158 Halococcus salsus 2162894 Archaea Archaea 147 5.83e-39   NR WP_240145698.1 2162894 g44483 i0 100 0.797872340425532 75 0 79.8 0 272 48 1 75 WP_240145698.1 DUF11 domain-containing protein [Halococcus salsus] diamond 225 147 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus salsus
28789604 28789604 PRJNA752278_P_NODE_92047_length_246_cov_0.890173_g91844_i0 PRJNA752278 92047 246 0.890173 2.18982558 Halobacteriales archaeon QS_3_64_16 1919172 Archaea Archaea 105 3.64e-26   NR PSP73735.1 1919172 g91844 i0 64.2 0.98780487804878 81 29 98.8 0 244 2 22 102 PSP73735.1 MAG: DNA-binding protein [Halobacteriales archaeon QS_3_64_16] diamond 243 105 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon QS_3_64_16
30062598 30062598 PRJNA752278_P_NODE_93091_length_245_cov_1.598837_g92888_i0 PRJNA752278 93091 245 1.598837 3.91715065 Halopelagius 1008195 Archaea Archaea 105 4.04e-25   NR WP_379695471.1 1198324 g92888 i0 61.3 2.65714285714286 75 29 91.8 0 227 3 49 123 WP_379695471.1 endonuclease/exonuclease/phosphatase family protein [Halopelagius fulvigenes] diamond 651 105 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopelagius Halopelagius fulvigenes
30432381 30432381 PRJNA752278_P_NODE_69173_length_259_cov_1.419355_g68970_i0 PRJNA752278 69173 259 1.419355 3.67612945 Haloarcula litorea 3032579 Archaea Archaea 43.1 0.0286   NR WP_276271847.1 3032579 g68970 i0 51.5 0.382239382239382 33 16 38.2 0 173 75 114 146 WP_276271847.1 cytochrome c oxidase subunit II [Haloarcula litorea] diamond 99 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula litorea
30464012 30464012 PRJNA752278_P_NODE_82253_length_249_cov_1.750000_g82050_i0 PRJNA752278 82253 249 1.75 4.3575 Halocatena marina 2934937 Archaea Archaea 114 1.19e-30   NR WP_390207810.1 2934937 g82050 i0 65.9 1.97590361445783 82 28 98.8 0 3 248 13 94 WP_390207810.1 IclR family transcriptional regulator domain-containing protein [Halocatena marina] diamond 492 114 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halocatena Halocatena marina
31538340 31538340 PRJNA752278_P_NODE_59756_length_268_cov_1.384615_g59553_i0 PRJNA752278 59756 268 1.384615 3.7107682 Methanosarcinales archaeon 2250255 Archaea Archaea 96.3 2.6200000000000003e-21   NR RYE85249.1 2250255 g59553 i0 47.7 0.962686567164179 86 45 96.3 0 262 5 29 114 RYE85249.1 MAG: hypothetical protein EOO65_00785 [Methanosarcinales archaeon] diamond 258 96.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
31601587 31601587 PRJNA752278_P_NODE_41796_length_285_cov_1.443396_g41593_i0 PRJNA752278 41796 285 1.443396 4.1136786 Natronomonas moolapensis 8.8.11 268739 Archaea Archaea 52.8 1.81e-5   NR CCQ37704.1 268739 g41593 i0 37.1 2.81052631578947 89 51 92.6 2 282 19 168 252 CCQ37704.1 transport protein (probable substrate ammonium) [Natronomonas moolapensis 8.8.11] diamond 801 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas moolapensis
32044299 32044299 PRJNA752278_P_NODE_21918_length_344_cov_2.210332_g21715_i0 PRJNA752278 21918 344 2.210332 7.60354208 Halovivax gelatinilyticus 2961597 Archaea Archaea 52 6.67e-5   NR WP_254864058.1 2961597 g21715 i0 50 0.950581395348837 52 23 45.3 1 2 157 601 649 WP_254864058.1 ABC transporter ATP-binding protein [Halovivax gelatinilyticus] diamond 327 52 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovivax Halovivax gelatinilyticus
32833957 32833957 PRJNA752278_P_NODE_40180_length_287_cov_0.892523_g39977_i0 PRJNA752278 40180 287 0.892523 2.56154101 Methanomicrobia archaeon 2268195 Archaea Archaea 56.2 1.13e-6   NR HDS45514.1 2268195 g39977 i0 41.4 0.731707317073171 70 33 69 3 279 82 542 607 HDS45514.1 hypothetical protein [Methanomicrobia archaeon] diamond 210 56.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia       Methanomicrobia archaeon
32906763 32906763 PRJNA752278_P_NODE_72480_length_256_cov_1.262295_g72277_i0 PRJNA752278 72480 256 1.262295 3.2314752 Stenosarchaea group 2290931 Archaea Archaea 84.7 7.43e-17   NR WP_076609314.1 308853 g72277 i0 54.3 7.72265625 81 31 94.9 1 253 11 605 679 WP_076609314.1 AAA family ATPase [Natronorubrum thiooxidans] diamond 1977 85.5 0.990643274853801 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum thiooxidans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;