RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA752278", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA752278 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3278897 3278897 PRJNA752278_P_NODE_45923_length_281_cov_1.442308_g45720_i0 PRJNA752278 45923 281 1.442308 4.05288548 Bacteria 2 Bacteria Bacteria 152 6.28e-42   NR MBD3379977.1 2035772 g45720 i0 74.2 27.8007117437722 93 24 99.3 0 1 279 275 367 MBD3379977.1 adenosylhomocysteinase [Candidatus Omnitrophota bacterium] diamond 7812 152 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
5830481 5830481 PRJNA752278_P_NODE_111545_length_196_cov_4.813008_g111342_i0 PRJNA752278 111545 196 4.813008 9.43349568 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 100 1.22e-22   NR MBI4342978.1 2035772 g111342 i0 67.7 1.98979591836735 65 21 99.5 0 195 1 81 145 MBI4342978.1 carbamoyltransferase [Candidatus Omnitrophota bacterium] diamond 390 100 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28820982 28820982 PRJNA752278_P_NODE_106128_length_239_cov_2.518072_g105925_i0 PRJNA752278 106128 239 2.518072 6.01819208 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 47.4 8.46e-4   NR MFH1338997.1 2035772 g105925 i0 80 0.627615062761506 25 5 31.4 0 15 89 205 229 MFH1338997.1 thrombospondin type 3 repeat-containing protein [Candidatus Omnitrophota bacterium] diamond 150 47.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;