RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA752278", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA752278 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18579837 18579837 PRJNA752278_P_NODE_71555_length_256_cov_3.704918_g71352_i0 PRJNA752278 71555 256 3.704918 9.48459008 Methanobrevibacter sp. AbM4 224719 Archaea Archaea 462 9.07e-126   NTclustered gi|509083678|gb|CP004050.1| 224719 g71352 i0 99.605 0.98828125 253 1 99 0 4 256 486759 486507 Methanobrevibacter sp. AbM4, complete genome blastn 253 462 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. AbM4
23680974 23680974 PRJNA752278_P_NODE_699_length_1224_cov_8.980886_g573_i0 PRJNA752278 699 1224 8.980886 109.92604464 Methanobacterium sp. 2164 Archaea Archaea 55.5 4.62e-4   NR MDI6723994.1 2164 g573 i0 37.6 0.767156862745098 109 62 26.7 3 1141 815 476 578 MDI6723994.1 hypothetical protein [Methanobacterium sp.] diamond 939 55.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
23681421 23681421 PRJNA752278_P_NODE_95879_length_244_cov_1.456140_g95676_i0 PRJNA752278 95879 244 1.45614 3.5529816 Methanobrevibacter sp. AbM4 224719 Archaea Archaea 451 1.86e-122   NTclustered gi|509083678|gb|CP004050.1| 224719 g95676 i0 100 1 244 0 100 0 1 244 946674 946431 Methanobrevibacter sp. AbM4, complete genome blastn 244 451 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. AbM4
27220505 27220505 PRJNA752278_P_NODE_47982_length_279_cov_1.495146_g47779_i0 PRJNA752278 47982 279 1.495146 4.17145734 Methanobacterium 2160 Archaea Archaea 111 1.97e-26   NR WP_048073057.1 2160 g47779 i0 60 7.62365591397849 90 36 96.8 0 272 3 336 425 WP_048073057.1 MULTISPECIES: DUF515 domain-containing protein [Methanobacterium] diamond 2127 112 0.991071428571429 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;