RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA752278", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA752278 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
727737 727737 PRJNA752278_P_NODE_57481_length_270_cov_1.538071_g57278_i0 PRJNA752278 57481 270 1.538071 4.1527917 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 460 3.4699999999999996e-125   NTclustered gi|62910949|gb|AY925001.1| 5778 g57278 i0 97.407 2.26666666666667 270 7 100 0 1 270 418 687 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 612 460 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3278009 3278009 PRJNA752278_P_NODE_100243_length_243_cov_0.905882_g100040_i0 PRJNA752278 100243 243 0.905882 2.20129326 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 281 2.57e-71   NTclustered gi|88601165|gb|DQ384330.1| 5778 g100040 i0 92.784 1.57201646090535 194 14 80 0 7 200 194 1 Hartmannella vermiformis succinyl-diaminopimelate desuccinylase-like protein B mRNA, partial cds blastn 382 281 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13954608 13954608 PRJNA752278_P_NODE_17211_length_375_cov_1.062914_g17008_i0 PRJNA752278 17211 375 1.062914 3.9859275 Saccamoeba 136463 Tubulinea other_Eukaryota 686 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g17008 i0 99.733 97.1493333333333 374 1 99 0 1 374 1254 1627 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 36431 686 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
24953597 24953597 PRJNA752278_P_NODE_21520_length_346_cov_2.619048_g21317_i0 PRJNA752278 21520 346 2.619048 9.06190608 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 638 1.9799999999999997e-178   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g21317 i0 100 92.3005780346821 345 0 99 0 1 345 757 1101 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 31936 638 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
29958000 29958000 PRJNA752278_P_NODE_66051_length_262_cov_1.513228_g65848_i0 PRJNA752278 66051 262 1.513228 3.96465736 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 96.3 2.14e-22   NR ABD46545.1 5778 g65848 i0 44.6 0.950381679389313 83 46 95 0 250 2 7 89 ABD46545.1 aldehyde dehydrogenase, partial [Vermamoeba vermiformis] diamond 249 96.3 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32297866 32297866 PRJNA752278_P_NODE_96119_length_244_cov_0.900585_g95916_i0 PRJNA752278 96119 244 0.900585 2.1974274 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 90.5 5.25e-20   NR AAY21191.1 5778 g95916 i0 57.5 1.9672131147541 80 34 98.4 0 242 3 158 237 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 480 90.5 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;